Evidence map›Paper›PMID 37382667›Full record

ArticleThe Journal of cell biology2023

A membrane-sensing mechanism links lipid metabolism to protein degradation at the nuclear envelope.

Shoken Lee, Jake W Carrasquillo Rodrı Guez, Holly Merta, Shirin Bahmanyar

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The Inner Nuclear Membrane Has a Unique Lipid Signature.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Mechanisms for assembly of the nucleoplasmic reticulum.Cellular and molecular life sciences : CMLS · 2024
    Review
  16. Article
  17. Article
  18. Article
  19. The Evolutionary Origins and Ancestral Features of Septins.bioRxiv : the preprint server for biology · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shoken LeeDepartment of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT, USA.ORCID 0000-0002-6410-1826
Jake W Carrasquillo Rodrı GuezDepartment of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT, USA.ORCID 0000-0003-2038-6329
Holly MertaDepartment of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT, USA.ORCID 0000-0003-4962-3658
Shirin BahmanyarDepartment of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT, USA.ORCID 0000-0002-6583-5055
Yale University · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
Defining the role of lipid metabolism in nuclear envelope identity and dynamicsR01GM131004 · NIGMS · YALE UNIVERSITY · PI Shirin Bahmanyar · 2019 to 2026
$2.8M
Training Program in Molecular MedicineT32GM100884 · NIGMS · YALE UNIVERSITY · PI LISTER, GEORGE, NITABACH, MICHAEL · 2013 to 2022
$1.8M
NIGMS NIH HHS R01 GM131004NIGMS NIH HHS T32 GM007499NIGMS NIH HHS T32 GM100884
6 · The paper itself

Abstract

Lipid composition determines organelle identity; however, whether the lipid composition of the inner nuclear membrane (INM) domain of the ER contributes to its identity is not known. Here, we show that the INM lipid environment of animal cells is under local control by CTDNEP1, the master regulator of the phosphatidic acid phosphatase lipin 1. Loss of CTDNEP1 reduces association of an INM-specific diacylglycerol (DAG) biosensor and results in a decreased percentage of polyunsaturated containing DAG species. Alterations in DAG metabolism impact the levels of the resident INM protein Sun2, which is under local proteasomal regulation. We identify a lipid-binding amphipathic helix (AH) in the nucleoplasmic domain of Sun2 that prefers membrane packing defects. INM dissociation of the Sun2 AH is linked to its proteasomal degradation. We suggest that direct lipid-protein interactions contribute to sculpting the INM proteome and that INM identity is adaptable to lipid metabolism, which has broad implications on disease mechanisms associated with the nuclear envelope.

Indexed as

Lipid MetabolismMembrane ProteinsNuclear EnvelopePhosphoprotein PhosphatasesAnimalsMembranesProteolysisMembrane ProteinsPhosphoprotein Phosphatases

Identifiers

PMID37382667
PMCPMC10309186
OpenAlexW4382502862

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.