Evidence map›Paper›PMID 37382666›Full record

ArticleThe Journal of cell biology2023

A PI(3,5)P2 reporter reveals PIKfyve activity and dynamics on macropinosomes and phagosomes.

James H Vines, Hannes Maib, Catherine M Buckley, Aurelie Gueho, Zhou Zhu, Thierry Soldati, David H Murray, Jason S King

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 46 citations in OpenAlex.

  1. PI(3,5)PScience advances · 2026
    Article
  2. Quantitative comparison of PI(3,5)PMolecular biology of the cell · 2026
    Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. How endosomal PIKfyve inhibition prevents viral membrane fusion and entry.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Subcellular Cartography of the Phosphoinositide Multiverse.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2026
    Review
  14. Article
  15. PIKfyve mediates the maturation of mycobacteria-containing vesicles.Frontiers in cellular and infection microbiology · 2026
    Article
  16. Treatment ofFrontiers in toxicology · 2026
    Article
  17. Review
  18. PtdIns(3,5)PbioRxiv : the preprint server for biology · 2025
    Article
  19. Article
  20. Quantitative comparison of PI(3,5)PbioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

James H VinesSchool of Biosciences, University of Sheffield, Firth Court Western Bank, Sheffield, UK.ORCID 0000-0001-5858-3083
Hannes MaibDivision of Molecular, Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee, UK.ORCID 0000-0002-1714-5746
Catherine M BuckleySchool of Biosciences, University of Sheffield, Firth Court Western Bank, Sheffield, UK.ORCID 0000-0003-2105-0456
Aurelie GuehoDepartment of Biochemistry, Faculty of Science, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-8992-8686
Zhou ZhuSchool of Biosciences, University of Sheffield, Firth Court Western Bank, Sheffield, UK.ORCID 0009-0007-5863-4777
Thierry SoldatiDepartment of Biochemistry, Faculty of Science, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-2056-7931
David H MurrayDivision of Molecular, Cell and Developmental Biology, School of Life Sciences, University of Dundee, Dundee, UK.ORCID 0000-0003-2582-8552
Jason S KingSchool of Biosciences, University of Sheffield, Firth Court Western Bank, Sheffield, UK.ORCID 0000-0003-0596-4506
University of Sheffield · GBUniversity of Dundee · GBUniversity of Geneva · CH

Funding

Wellcome TrustWellcome Trust 211193/Z/18/Z
6 · The paper itself

Abstract

Phosphoinositide signaling lipids (PIPs) are key regulators of membrane identity and trafficking. Of these, PI(3,5)P2 is one of the least well-understood, despite key roles in many endocytic pathways including phagocytosis and macropinocytosis. PI(3,5)P2 is generated by the phosphoinositide 5-kinase PIKfyve, which is critical for phagosomal digestion and antimicrobial activity. However PI(3,5)P2 dynamics and regulation remain unclear due to lack of reliable reporters. Using the amoeba Dictyostelium discoideum, we identify SnxA as a highly selective PI(3,5)P2-binding protein and characterize its use as a reporter for PI(3,5)P2 in both Dictyostelium and mammalian cells. Using GFP-SnxA, we demonstrate that Dictyostelium phagosomes and macropinosomes accumulate PI(3,5)P2 3 min after engulfment but are then retained differently, indicating pathway-specific regulation. We further find that PIKfyve recruitment and activity are separable and that PIKfyve activation stimulates its own dissociation. SnxA is therefore a new tool for reporting PI(3,5)P2 in live cells that reveals key mechanistic details of the role and regulation of PIKfyve/PI(3,5)P2.

Indexed as

DictyosteliumPhagosomesPhosphatidylinositol 3-KinasesAnimalsEndosomesMammalsPhosphatidylinositol PhosphatesPhosphatidylinositolsphosphatidylinositol 3,5-diphosphatePhosphatidylinositol 3-KinasesPhosphatidylinositol PhosphatesPhosphatidylinositols

Identifiers

PMID37382666
PMCPMC10309190
OpenAlexW4382501500

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.