ArticleThe Journal of heredity2023
A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data.
Article in The Journal of heredity, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- First Taxonomically Curated DNA Barcode Reference Library for Polish Myriapods Fills an Important Knowledge Gap for Soil Invertebrates in Central Europe, Part I: Millipedes (Myriapoda: Diplopoda).Ecology and evolution · 2026Article
- Single Nucleotide Polymorphisms in Distant Kinship Inference and Forensic Genetic Genealogy.International journal of molecular sciences · 2026Review
- BeeGees: A High-Throughput Protein-Coding DNA Barcode Recovery Pipeline Tailored for Genome Skims of Museum Specimens.Molecular ecology resources · 2026Article
- Persistent trade-offs balance competition and colonization across centuries.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Genetic Diversity and Population Structure of the Black-Footed Cat: Insights intobioRxiv : the preprint server for biology · 2026Article
- Naturally-occurring DNA fragment termini correlate with methylation at CpG sites in hair and blood plasma cell-free DNA.BMC genomics · 2026Article
- Rootless hair as a reliable source of forensic genetic information.Genome biology · 2026Article
- Machine learning improves SNP microarray performance in challenged samples.Bioinformatics advances · 2026Article
- Persistent trade-offs balance competition and colonization across centuries.bioRxiv : the preprint server for biology · 2025Article
- Paleogenomics Reveals a Loss of Bovine Lineages in Mid-latitude Asia Over the Last 200,000 Years.Genome biology and evolution · 2025Article
- On forensic likelihood ratios from low-coverage sequencing.Forensic science international. Genetics · 2025Article
- Recent Adaptation in a Threatened Salmonid Revealed by Museum Genomics.Molecular ecology · 2025Article
- clusIBD: Robust Detection of Identity-by-descent Segments Using Unphased Genetic Data from Poor-quality Samples.Genomics, proteomics & bioinformatics · 2025Article
- A Computer Vision Method for Finding Mislabelled Specimens Within Natural History Collections.Ecology and evolution · 2025Article
- A High-Throughput Ancient DNA Extraction Method for Large-Scale Sample Screening.Molecular ecology resources · 2025Article
- Benchmarking for genotyping and imputation using degraded DNA for forensic applications across diverse populations.Forensic science international. Genetics · 2025Article
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5 authors.
Funding
Abstract
Several methods exist for detecting genetic relatedness or identity by comparing DNA information. These methods generally require genotype calls, either single-nucleotide polymorphisms or short tandem repeats, at the sites used for comparison. For some DNA samples, like those obtained from bone fragments or single rootless hairs, there is often not enough DNA present to generate genotype calls that are accurate and complete enough for these comparisons. Here, we describe IBDGem, a fast and robust computational procedure for detecting genomic regions of identity-by-descent by comparing low-coverage shotgun sequence data against genotype calls from a known query individual. At less than 1× genome coverage, IBDGem reliably detects segments of relatedness and can make high-confidence identity detections with as little as 0.01× genome coverage.
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