Evidence map›Paper›PMID 37380940›Full record

ArticleBMC genomics2023

Genome-wide identification of the PYL gene family of tea plants (Camellia sinensis) revealed its expression profiles under different stress and tissues.

Yanlin An, Xiaozeng Mi, Xiaobo Xia, Dahe Qiao, Shirui Yu, Huayan Zheng, Tingting Jing, Feng Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Yanlin An *Department of Food Science and Engineering, Moutai Institute, Luban Street, Renhuai, 564502, Guizhou, P.R. China.
Xiaozeng Mi *Tea Research Institute, Guizhou Academy of Agricultural Sciences, 1 Jinxin Community, Guiyang, 550025, Guizhou, China.
Xiaobo XiaCollege of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, China.
Dahe QiaoTea Research Institute, Guizhou Academy of Agricultural Sciences, 1 Jinxin Community, Guiyang, 550025, Guizhou, China.
Shirui YuDepartment of Food Science and Engineering, Moutai Institute, Luban Street, Renhuai, 564502, Guizhou, P.R. China.
Huayan ZhengDepartment of Food Science and Engineering, Moutai Institute, Luban Street, Renhuai, 564502, Guizhou, P.R. China.
Tingting JingState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, China. jtt0127@163.com.
Feng ZhangDepartment of Food Science and Engineering, Moutai Institute, Luban Street, Renhuai, 564502, Guizhou, P.R. China. nkzhangfeng@163.com.
Anhui Agricultural University · CNGuizhou Academy of Agricultural Sciences · CNNanjing Agricultural University · CNTea Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPYL (Pyrabactin resistance 1-like) protein is a receptor of abscisic acid (ABA), which plays an important role in ABA signaling and influences plant growth and development and stress response. However, studies on PYL gene family in tea plants have not been reported.

resultsIn this study, we identified 20 PYL genes from the reference genome of tea plant ('Shuchazao'). Phylogeny analysis indicated that PYLs from tea and other plant species were clustered into seven groups. The promoter region of PYL genes contains a large number of cis-elements related to hormones and stresses. A large number of PYL genes responding to stress were found by analyzing the expression levels of abiotic stress and biotic stress transcriptome data. For example, CSS0047272.1 were up-regulated by drought stress, and CSS0027597.1 could respond to both anthracnose disease and geometrid feeding treatments. In addition, 10 PYL genes related to growth and development were verified by RT-qPCR and their tissue expression characteristics were revealed.

conclusionsOur results provided a comprehensive characteristic of the PYL gene family in tea plants and provided an important clue for further exploring its functions in the growth and development, and resistance to stress of tea plants.

Indexed as

Camellia sinensisAbscisic AcidDroughtsTeaTranscriptomeAbscisic AcidTeaGene expressionPYL gene familyStressTea plantTissue

Identifiers

PMID37380940
PMCPMC10304716
OpenAlexW4382402681

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.