Evidence map›Paper›PMID 37380915›Full record

ArticleJournal of molecular modeling2023

Conceptual DFT, machine learning and molecular docking as tools for predicting LD

Uriel J Rangel-Peña, Luis A Zárate-Hernández, Rosa L Camacho-Mendoza, Carlos Z Gómez-Castro, Simplicio González-Montiel, Miriam Pescador-Rojas, Amilcar Meneses-Viveros, Julián Cruz-Borbolla

Abstract read
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In one paragraph

Article in Journal of molecular modeling, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Uriel J Rangel-PeñaArea Académica de Química, Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca-Tulancingo, Ciudad del Conocimiento, C.P. 42184, Mineral de La Reforma, Hidalgo, México.
Luis A Zárate-HernándezArea Académica de Química, Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca-Tulancingo, Ciudad del Conocimiento, C.P. 42184, Mineral de La Reforma, Hidalgo, México.
Rosa L Camacho-MendozaArea Académica de Química, Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca-Tulancingo, Ciudad del Conocimiento, C.P. 42184, Mineral de La Reforma, Hidalgo, México.
Carlos Z Gómez-CastroArea Académica de Química, Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca-Tulancingo, Ciudad del Conocimiento, C.P. 42184, Mineral de La Reforma, Hidalgo, México.
Simplicio González-MontielArea Académica de Química, Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca-Tulancingo, Ciudad del Conocimiento, C.P. 42184, Mineral de La Reforma, Hidalgo, México.
Miriam Pescador-RojasEscuela Superior de Cómputo, Instituto Politécnico Nacional, Mexico, México.
Amilcar Meneses-ViverosDepartamento de Computación, CINVESTAV-IPN, Av. IPN 2508, Col. San Pedro Zacatenco, Ciudad de Mexico, 07360, México.
Julián Cruz-BorbollaArea Académica de Química, Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca-Tulancingo, Ciudad del Conocimiento, C.P. 42184, Mineral de La Reforma, Hidalgo, México. jcruz@uaeh.edu.mx.
Universidad Autónoma del Estado de Hidalgo · MXCentro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional · MXInstituto Politécnico Nacional · MX

Funding

NEW PHENYL NUCLEOSIDES AS ANTI-HIV AGENTSR03DA015618 · NIDA · XAVIER UNIVERSITY OF LOUISIANA · PI PHADTARE, SHASHIKANT K · 2002 to 2003
$145k
Consejo Nacional de Humanidades Ciencias y Tecnologias 1561802
6 · The paper itself

Abstract

contextSeveral descriptors from conceptual density functional theory (cDFT) and the quantum theory of atoms in molecules (QTAIM) were utilized in Random Forest (RF), LASSO, Ridge, Elastic Net (EN), and Support Vector Machines (SVM) methods to predict the toxicity (LD

methodsThe molecular structure of all organothiophosphates was optimized via the range-separated hybrid functional ωB97XD with the 6-311 +  + G** basis set. Seven hundred and eighty-seven descriptors have been processed using a variety of machine learning algorithms: RF LASSO, Ridge, EN and SVM to generate a predictive model. The properties were obtained with Multiwfn, AIMALL and VMD programs. Docking simulations were performed by using AutoDock 4.2 and LigPlot + programs. All the calculations in this work are carried out in Gaussian 16 program package.

Indexed as

Artificial intelligencecDFTMolecular dockingOrganothiophosphateQSTRToxicity

Identifiers

PMID37380915
OpenAlexW4382361909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.