Evidence map›Paper›PMID 37379836›Full record

ArticleAmerican journal of human genetics2023

Polygenic risk prediction: why and when out-of-sample prediction R

Xiaotong Wang, Alicia Walker, Joana A Revez, Guiyan Ni, Mark J Adams, Andrew M McIntosh, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, Peter M Visscher, Naomi R Wray

Abstract read
In one paragraph

Article in American journal of human genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Family-GWAS reveals effects of environment and mating on genetic associations.medRxiv : the preprint server for health sciences · 2025
    Article
  11. Development and Validation of Polygenic Scores for Retinal Vessel Calibers.Investigative ophthalmology & visual science · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Transfer Learning Prediction of Early Exposures and Genetic Risk Score on Adult Obesity in Two Minority Cohorts.Prevention science : the official journal of the Society for Prevention Research · 2025
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xiaotong WangInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.
Alicia WalkerInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.
Joana A RevezInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.
Guiyan NiInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.
Mark J AdamsDivision of Psychiatry, University of Edinburgh, Edinburgh, UK.
Andrew M McIntoshDivision of Psychiatry, University of Edinburgh, Edinburgh, UK; Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK.
Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium
Peter M VisscherInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia. Electronic address: peter.visscher@uq.edu.au.
Naomi R WrayInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia; Queensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia. Electronic address: naomi.wray@uq.edu.au.

Funding

1/7 PGC: Advancing Discovery and ImpactR01MH124871 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BULIK, CYNTHIA M, SULLIVAN, PATRICK F · 2021 to 2025
$3.5M
7/7 Psychiatric Genomics Consortium: Finding actionable variationU01MH109532 · NIMH · WASHINGTON UNIVERSITY · PI AGRAWAL, ARPANA, EDENBERG, HOWARD J · 2016 to 2020
$3.1M
2/2 Genetics at an extreme: an efficient genomic study of individuals with clinically severe major depression receiving ECTR01MH121545 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SULLIVAN, PATRICK F · 2019 to 2023
$2.9M
1/7 Psychiatric Genomics Consortium: Finding actionable variationU01MH109528 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SULLIVAN, PATRICK F · 2016 to 2020
$2.5M
NIMH NIH HHS R01 MH121545NIMH NIH HHS R01 MH124871NIMH NIH HHS U01 MH109528NIMH NIH HHS U01 MH109532
6 · The paper itself

Abstract

In polygenic score (PGS) analysis, the coefficient of determination (R

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideComputer SimulationHumansMultifactorial InheritancePhenotypemeta-analysisout-of-sample prediction R(2)polygenic risk predictionSNP-based heritability

Identifiers

PMID37379836
PMCPMC10357496

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.