Evidence map›Paper›PMID 37379700›Full record

ArticleTicks and tick-borne diseases2023

Functional analysis of Rickettsia monacensis strain humboldt folA dihydrofolate reductase gene via complementation assay.

Brandon Hill, Ben Schafer, Nolan Vargas, Danny Zamora, Rohan Shrotri, Sarahi Perez, Geoffrey Farmer, Aren Avon, Anirudh Pai, Hirotada Mori and 1 more

Open access · goldAbstract read
In one paragraph

Article in Ticks and tick-borne diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Effect ofFrontiers in microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Brandon HillDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Ben SchaferDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Nolan VargasDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Danny ZamoraDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Rohan ShrotriDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Sarahi PerezDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Geoffrey FarmerDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Aren AvonDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Anirudh PaiDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
Hirotada MoriLaboratory of Systems Microbiology, Data Science Center, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan.
Jianmin ZhongDepartment of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America. Electronic address: jz15@humboldt.edu.
Humboldt State University · USCalifornia Polytechnic State University · USCalifornia State Polytechnic University · USNara Institute of Science and Technology · JP

Funding

Symbiotic Rickettsia Species as a Model System for the Study of Folate BiosynthesR15AI099902 · NIAID · HUMBOLDT STATE UNIVERSITY · PI ZHONG, JIANMIN · 2012 to 2012
$354k
NIAID NIH HHS R15 AI099902
6 · The paper itself

Abstract

Nutritive symbiosis between bacteria and ticks is observed across a range of ecological contexts; however, little characterization on the molecular components responsible for this symbiosis has been done. Previous studies in our lab demonstrated that Rickettsia monacensis str. Humboldt (strain Humboldt) can synthesize folate de novo via the folate biosynthesis pathway involving folA, folC, folE, folKP, and ptpS genes. In this study, expression of the strain Humboldt folA gene within a folA mutant Escherichia coli construct was used to functionally characterize the strain Humboldt folA folate gene in vivo. The strain Humboldt folA folate gene was subcloned into a TransBac vector and transformed into a folA mutant E. coli construct. The mutant containing strain Humboldt folA subclone and a pFE604 clone of the knocked-out folA gene was cured of pFE604. Curing of the folA mutant E. coli construct was successful using acridine orange and 43.5 °C incubation temperature. The plasmid curing assay showed curing efficiency of the folA mutant at 100%. Functional complementation was assessed by growth phenotype on minimal media with and without IPTG between strain Humboldt folA and E. coli folA. Large and homogenous wild-type colony growth was observed for both strain Humboldt and E. coli folA on minimal media with 0.1 mM IPTG, wild-type growth for strain Humboldt folA and pin-point growth for E. coli folA on 0.01 mM IPTG, and pin-point growth without IPTG for both strain Humboldt and E. coli folA. This study provides evidence substantiating the in vivo functionality of strain Humboldt folA in producing functional gene products for folate biosynthesis.

Indexed as

Escherichia coliRickettsiaAnimalsFolic AcidIsopropyl ThiogalactosideTetrahydrofolate DehydrogenaseFolic AcidIsopropyl ThiogalactosideTetrahydrofolate DehydrogenaseComplementation assayDihydrofolate reductasefolAIxodes pacificusRickettsia monacensis strain humboldt

Identifiers

PMID37379700
PMCPMC12234075
OpenAlexW4382044703

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.