Evidence map›Paper›PMID 37378773›Full record

ArticleAdvances in experimental medicine and biology2023

Amplicon-Based Nanopore Sequencing of Patients Infected by the SARS-CoV-2 Omicron (B.1.1.529) Variant in India.

Somesh Kumar, Avinash Lomash, Mohammed Faruq, Oves Siddiqui, Suresh Kumar, Seema Kapoor, Prashanth Suravajhala, Sunil K Polipalli

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Article in Advances in experimental medicine and biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Somesh Kumar *Genome Sequencing Laboratory, Lok Nayak Hospital, New Delhi, Delhi, India.
Avinash Lomash *Genome Sequencing Laboratory, Lok Nayak Hospital, New Delhi, Delhi, India.
Mohammed FaruqGenomic & Molecular Medicine Division, CSIR-Institute of Genomics & Integrative Biology, New Delhi, India.
Oves SiddiquiDepartment of Microbiology, Maulana Azad Medical College, New Delhi, India.
Suresh KumarGenome Sequencing Laboratory, Lok Nayak Hospital, New Delhi, Delhi, India.
Seema KapoorGenome Sequencing Laboratory, Lok Nayak Hospital, New Delhi, Delhi, India.
Prashanth SuravajhalaBioclues.org, Hyderabad, India. prash@bioclues.org.
Sunil K Polipalli *Genome Sequencing Laboratory, Lok Nayak Hospital, New Delhi, Delhi, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the sequencing of SARS-CoV-2 Omicron variants from 75 patients, using nanopore long-read sequencing chemistry. These data show a range of mutations in spike glycoprotein that are both unique and common to other populations.

Indexed as

COVID-19Nanopore SequencingHumansIndiaMutationSARS-CoV-2COVID-19MutationOmicronSARS-CoV-2Sequencing

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.