Evidence map›Paper›PMID 37378772›Full record

ArticleAdvances in experimental medicine and biology2023

Inferring Recombination Events in SARS-CoV-2 Variants In Silico.

Nihal Najeeb, Aparna B Murukan, Anagha Renjitha, Malavika Jayaram, Ayisha A Jabbar, Haripriya Haridasan, Akshara Prijikumar, Sneha Baiju, Adrial Ann Nixon, Ponnambil Anantha Krishnan and 12 more

Abstract read
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In one paragraph

Article in Advances in experimental medicine and biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Nihal Najeeb *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Aparna B Murukan *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Anagha Renjitha *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Malavika Jayaram *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Ayisha A Jabbar *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Haripriya Haridasan *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Akshara Prijikumar *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Sneha Baiju *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Adrial Ann Nixon *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Ponnambil Anantha Krishnan *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Sunu Rodriguez *Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Somesh KumarGenome Sequencing Lab, Lok Nayak Hospital, Delhi, India.
Sunil K PolipalliGenome Sequencing Lab, Lok Nayak Hospital, Delhi, India.
Keshav K SinghDepartment of Genetics, Heersink School of Medicine, University of Alabama at Birmingham, Kaul Genetics Building, Birmingham, AL, USA.
Bipin G NairAmrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Sudeep D GhateCenter for Bioinformatics, NITTE University, Mangaluru, India.
R Shyama Prasad RaoCenter for Bioinformatics, NITTE University, Mangaluru, India.
Polavarapu Bilhan Kavi KishorDepartment of Genetics, Osmania University, Hyderabad, India.
Arya AloorAmrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Renuka SuravajhalaAmrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India.
Gyaneshwer ChaubeyCytogenetics Laboratory, Department of Zoology, Banaras Hindu University, Varanasi, Uttar Pradesh, India.
Prashanth SuravajhalaAmrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Clappana, Kerala, India. prash@am.amrita.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the last 34 months, at least 10 severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) distinct variants have evolved. Among these, some were more infectious while others were not. These variants may serve as candidates for identification of the signature sequences linked to infectivity and viral transgressions. Based on our previous hijacking and transgression hypothesis, we aimed to investigate whether SARS-CoV-2 sequences associated with infectivity and trespassing of long noncoding RNAs (lncRNAs) provide a possible recombination mechanism to drive the formation of new variants. This work involved a sequence and structure-based approach to screen SARS-CoV-2 variants in silico, taking into account effects of glycosylation and links to known lncRNAs. Taken together, the findings suggest that transgressions involving lncRNAs may be linked with changes in SARS-CoV-2-host interactions driven by glycosylation events.

Indexed as

COVID-19RNA, Long NoncodingHumansRecombination, GeneticSARS-CoV-2RNA, Long NoncodingCOVID-19GlycosylationlncRNASARS-CoV-2Spike proteinVariant

Identifiers

PMID37378772

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.