Evidence map›Paper›PMID 37378705›Full record

ArticlePlant cell reports2023

Evolution of antimicrobial cysteine-rich peptides in plants.

Huizhen Ma, Yong Feng, Qianqian Cao, Jing Jia, Muhammad Ali, Dilip Shah, Blake C Meyers, Hai He, Yu Zhang

Abstract read
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In one paragraph

Article in Plant cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
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  10. Review
  11. Carboxypeptidase inhibitors fromFrontiers in molecular biosciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Huizhen Ma *Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China.
Yong Feng *Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China.
Qianqian CaoShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China.
Jing JiaShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China.
Muhammad AliSchool of Agriculture, Sun Yat-Sen University, Shenzhen, 518107, China.
Dilip ShahDonald Danforth Plant Science Center, Saint Louis, MI, 63132, USA.
Blake C MeyersDonald Danforth Plant Science Center, Saint Louis, MI, 63132, USA.
Hai HeSchool of Agriculture, Sun Yat-Sen University, Shenzhen, 518107, China. hehai@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0001-7246-1197
Yu ZhangSchool of Agriculture, Sun Yat-Sen University, Shenzhen, 518107, China. zhangy2526@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0001-6547-6243

Funding

National Natural Science Foundation of China 32070250Natural Science Foundation of Guangdong Province 2020A1515011030Natural Science Foundation of Guangdong Province 2022A1515110240
6 · The paper itself

Abstract

key messageWe analyzed the evolutionary pattern of cysteine-rich peptides (CRPs) to infer the relationship between CRP copy number and plant ecotype, and the origin of bi-domains CRPs. Plants produce cysteine-rich peptides (CRPs) that have long-lasting broad-spectrum antimicrobial activity to protect themselves from various groups of pathogens. We analyzed 240 plant genomes, ranging from algae to eudicots, and discovered that CRPs are widely distributed in plants. Our comparative genomics results revealed that CRP genes have been amplified through both whole genome and local tandem duplication. The copy number of these genes varied significantly across lineages and was associated with the plant ecotype. This may be due to their resistance to changing pathogenic environments. The conserved and lineage-specific CRP families contribute to diverse antimicrobial activities. Furthermore, we investigated the unique bi-domain CRPs that result from unequal crossover events. Our findings provide a unique evolutionary perspective on CRPs and insights into their antimicrobial and symbiosis characteristics.

Indexed as

Anti-Infective AgentsAntimicrobial PeptidesCysteineEvolution, MolecularPeptidesPhylogenyPlantsAnti-Infective AgentsAntimicrobial PeptidesCysteinePeptidesAntimicrobial peptidesCysteine-rich peptidesGene duplicationPlant disease resistance

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.