Evidence map›Paper›PMID 37378086›Full record

ArticleOptics continuum2022

Computational microscopy for fast widefield deep-tissue fluorescence imaging using a commercial dual-cannula probe.

Ekata Mitra, Ruipeng Guo, Soren Nelson, Naveen Nagarajan, Rajesh Menon

Open access · goldAbstract read
In one paragraph

Article in Optics continuum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ekata MitraDepartment of Electrical & Computer Engineering, University of Utah, Salt Lake City, UT 84112, USA.
Ruipeng GuoDepartment of Electrical & Computer Engineering, University of Utah, Salt Lake City, UT 84112, USA.
Soren NelsonDepartment of Computer Science, Boston University, Boston, MA 02215, USA.
Naveen NagarajanDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.
Rajesh MenonDepartment of Electrical & Computer Engineering, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0002-4777-376X
University of Utah · US

Funding

Expanding field-of-view with reduced tissue displacement in micro-endoscopic computational imagingR21EY030717 · NEI · UNIVERSITY OF UTAH · PI BLAIR, STEVEN M, MENON, RAJESH · 2019 to 2019
$457k
NEI NIH HHS R21 EY030717
6 · The paper itself

Abstract

A solid-glass cannula serves as a micro-endoscope that can deliver excitation light deep inside tissue while also collecting emitted fluorescence. Then, we utilize deep neural networks to reconstruct images from the collected intensity distributions. By using a commercially available dual-cannula probe, and training a separate deep neural network for each cannula, we effectively double the field of view compared to prior work. We demonstrated ex vivo imaging of fluorescent beads and brain slices and in vivo imaging from whole brains. We clearly resolved 4 μm beads, with FOV from each cannula of 0.2 mm (diameter), and produced images from a depth of ~1.2 mm in the whole brain, currently limited primarily by the labeling. Since no scanning is required, fast widefield fluorescence imaging limited primarily by the brightness of the fluorophores, collection efficiency of our system, and the frame rate of the camera becomes possible.

Identifiers

PMID37378086
PMCPMC10299805
OpenAlexW4294225152

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.