Evidence map›Paper›PMID 37376488›Full record

ArticleVaccines2023

A Customizable Suite of Methods to Sequence and Annotate Cattle Antibodies.

Kristel Ramirez Valdez, Benjamin Nzau, Daniel Dorey-Robinson, Michael Jarman, James Nyagwange, John C Schwartz, Graham Freimanis, Angela W Steyn, George M Warimwe, Liam J Morrison and 4 more

Open access · goldAbstract read
In one paragraph

Article in Vaccines, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Nebulization of an mRNA-encoded monoclonal antibody for passive immunization of foals against Rhodococcus equi.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  6. Article
  7. The impact of exchanging the light and heavy chains on the structures of bovine ultralong antibodies.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Kristel Ramirez ValdezThe Pirbright Institute, Pirbright GU24 0NF, UK.
Benjamin NzauThe Pirbright Institute, Pirbright GU24 0NF, UK.
Daniel Dorey-RobinsonThe Pirbright Institute, Pirbright GU24 0NF, UK.
Michael JarmanThe Pirbright Institute, Pirbright GU24 0NF, UK.ORCID 0009-0000-7228-7213
James NyagwangeThe Pirbright Institute, Pirbright GU24 0NF, UK.ORCID 0000-0001-5430-6011
John C SchwartzThe Pirbright Institute, Pirbright GU24 0NF, UK.ORCID 0000-0003-2057-1831
Graham FreimanisThe Pirbright Institute, Pirbright GU24 0NF, UK.ORCID 0000-0001-8186-2638
Angela W SteynThe Pirbright Institute, Pirbright GU24 0NF, UK.
George M WarimweKEMRI-Wellcome Trust Research Programme CGMRC, Kilifi P.O. Box 230-80108, Kenya.
Liam J MorrisonRoslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, UK.
William MwangiThe Pirbright Institute, Pirbright GU24 0NF, UK.
Bryan CharlestonThe Pirbright Institute, Pirbright GU24 0NF, UK.
Marie Bonnet-Di PlacidoThe Pirbright Institute, Pirbright GU24 0NF, UK.ORCID 0000-0002-8299-5595
John A HammondThe Pirbright Institute, Pirbright GU24 0NF, UK.ORCID 0000-0002-2213-3248
The Pirbright Institute · GBKenya Medical Research Institute · KERoslin Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/I/00007037Biotechnology and Biological Sciences Research Council BBS/E/I/00007038Biotechnology and Biological Sciences Research Council BBS/E/I/00007039Gates Foundation OPP1192002, OPP1215550
6 · The paper itself

Abstract

Studying the antibody response to infection or vaccination is essential for developing more effective vaccines and therapeutics. Advances in high-throughput antibody sequencing technologies and immunoinformatic tools now allow the fast and comprehensive analysis of antibody repertoires at high resolution in any species. Here, we detail a flexible and customizable suite of methods from flow cytometry, single cell sorting, heavy and light chain amplification to antibody sequencing in cattle. These methods were used successfully, including adaptation to the 10x Genomics platform, to isolate native heavy-light chain pairs. When combined with the Ig-Sequence Multi-Species Annotation Tool, this suite represents a powerful toolkit for studying the cattle antibody response with high resolution and precision. Using three workflows, we processed 84, 96, and 8313 cattle B cells from which we sequenced 24, 31, and 4756 antibody heavy-light chain pairs, respectively. Each method has strengths and limitations in terms of the throughput, timeline, specialist equipment, and cost that are each discussed. Moreover, the principles outlined here can be applied to study antibody responses in other mammalian species.

Indexed as

10x Genomicsantibody discoveryantibody repertoireantibody sequencingIgMAT

Identifiers

PMID37376488
PMCPMC10302312
OpenAlexW4380996607

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.