Evidence map›Paper›PMID 37372434›Full record

ArticleGenes2023

Genome-Wide Identification and Analysis of the Hsp40/J-Protein Family Reveals Its Role in Soybean (

Muhammad Khuram Razzaq, Reena Rani, Guangnan Xing, Yufei Xu, Ghulam Raza, Muqadas Aleem, Shahid Iqbal, Muhammad Arif, Zahid Mukhtar, Henry T Nguyen and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. DNAJ protein gene expansion mechanism in Panicoideae and PgDNAJ functional identification in pearl millet.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  6. Genome-wide association study of soybean (Frontiers in plant science · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 4 countries.

Muhammad Khuram RazzaqSoybean Research Institute, MARA National Center for Soybean Improvement, MARA Key Laboratory of Biology and Genetic Improvement of Soybean, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-1916-4596
Reena RaniNational Institute for Biotechnology and Genetic Engineering, Faisalabad 38000, Pakistan.
Guangnan XingSoybean Research Institute, MARA National Center for Soybean Improvement, MARA Key Laboratory of Biology and Genetic Improvement of Soybean, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-2507-9195
Yufei XuSoybean Research Institute, MARA National Center for Soybean Improvement, MARA Key Laboratory of Biology and Genetic Improvement of Soybean, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China.
Ghulam RazaNational Institute for Biotechnology and Genetic Engineering, Faisalabad 38000, Pakistan.
Muqadas AleemCenter for Advanced Studies in Agriculture and Food Security (CAS-AFS), University of Agriculture, Faisalabad 38040, Pakistan.
Shahid IqbalHorticultural Science Department, North Florida Research and Education Center, University of Florida/IFAS, Quincy, FL 32351, USA.ORCID 0000-0003-4321-8598
Muhammad ArifNational Institute for Biotechnology and Genetic Engineering, Faisalabad 38000, Pakistan.
Zahid MukhtarNational Institute for Biotechnology and Genetic Engineering, Faisalabad 38000, Pakistan.
Henry T NguyenDivision of Plant Sciences and National Center for Soybean Biotechnology, University of Missouri-Columbia, Columbia, MO 65211, USA.ORCID 0000-0002-7597-1800
Rajeev K VarshneyCentre for Crop & Food Innovation, State Agricultural Biotechnology Centre, Food Futures Institute, Murdoch University, Murdoch, WA 6150, Australia.ORCID 0000-0002-4562-9131
Kadambot H M SiddiqueThe UWA Institute of Agriculture, The University of Western Australia, Perth, WA 6001, Australia.ORCID 0000-0001-6097-4235
Junyi GaiSoybean Research Institute, MARA National Center for Soybean Improvement, MARA Key Laboratory of Biology and Genetic Improvement of Soybean, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0001-6222-2010
Nanjing Agricultural University · CNNational Institute for Biotechnology and Genetic Engineering · PKMurdoch University · AUThe University of Western Australia · AUUniversity of Agriculture Faisalabad · PKUniversity of Florida · USUniversity of Missouri · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The J-protein family comprises molecular chaperones involved in plant growth, development, and stress responses. Little is known about this gene family in soybean. Hence, we characterized J-protein genes in soybean, with the most highly expressed and responsive during flower and seed development. We also revealed their phylogeny, structure, motif analysis, chromosome location, and expression. Based on their evolutionary links, we divided the 111 potential soybean J-proteins into 12 main clades (I-XII). Gene-structure estimation revealed that each clade had an exon-intron structure resembling or comparable to others. Most soybean J-protein genes lacked introns in Clades I, III, and XII. Moreover, transcriptome data obtained from a publicly accessible soybean database and RT-qPCR were used to examine the differential expression of DnaJ genes in various soybean tissues and organs. The expression level of DnaJ genes indicated that, among 14 tissues, at least one tissue expressed the 91 soybean genes. The findings suggest that J-protein genes could be involved in the soybean growth period and offer a baseline for further functional research into J-proteins' role in soybean. One important application is the identification of J-proteins that are highly expressed and responsive during flower and seed development in soybean. These genes likely play crucial roles in these processes, and their identification can contribute to breeding programs to improve soybean yield and quality.

Indexed as

Glycine maxHSP40 Heat-Shock ProteinsGrowth and DevelopmentPlant BreedingPlant ProteinsSoybean ProteinsHSP40 Heat-Shock ProteinsPlant ProteinsSoybean ProteinsGlycine max (L.) Merr.growth periodHsp40/J-protein familyJ-protein characterizationseed development

Identifiers

PMID37372434
PMCPMC10298129
OpenAlexW4380536920

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.