Evidence map›Paper›PMID 37371531›Full record

ArticleBiomolecules2023

Ribosomal Protein S12 Hastens Nucleation of Co-Transcriptional Ribosome Assembly.

Margaret L Rodgers, Yunsheng Sun, Sarah A Woodson

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Extraribosomal Functions of Bacterial Ribosomal Proteins-An Update, 2023.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Margaret L RodgersThomas C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0002-8176-2044
Yunsheng SunThomas C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA.
Sarah A WoodsonThomas C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0003-0170-1987
Johns Hopkins University · USNational Institutes of Health · US

Funding

Molecular mechanisms for co-transcriptional assembly of ribonucleoproteinsZIADK075175 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI RODGERS, MARGARET · 2023 to 2025
$7.2M
Assembly Mechanisms of RNA-Protein Complexes for Genetic ControlR35GM136351 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI SARAH A. WOODSON · 2020 to 2026
$4.4M
Molecular Mechanisms of Co-Transcriptional Ribonucleoprotein AssemblyK99GM140204 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI RODGERS, MARGARET LOUISE · 2021 to 2022
$180k
NIGMS NIH HHS K99 GM140204NIGMS NIH HHS R00 GM140204NIGMS NIH HHS R35 GM136351
6 · The paper itself

Abstract

Ribosomal subunits begin assembly during transcription of the ribosomal RNA (rRNA), when the rRNA begins to fold and associate with ribosomal proteins (RPs). In bacteria, the first steps of ribosome assembly depend upon recognition of the properly folded rRNA by primary assembly proteins such as S4, which nucleates assembly of the 16S 5' domain. Recent evidence, however, suggests that initial recognition by S4 is delayed due to variable folding of the rRNA during transcription. Here, using single-molecule colocalization co-transcriptional assembly (smCoCoA), we show that the late-binding RP S12 specifically promotes the association of S4 with the pre-16S rRNA during transcription, thereby accelerating nucleation of 30S ribosome assembly. Order of addition experiments suggest that S12 helps chaperone the rRNA during transcription, particularly near the S4 binding site. S12 interacts transiently with the rRNA during transcription and, consequently, a high concentration is required for its chaperone activity. These results support a model in which late-binding RPs moonlight as RNA chaperones during transcription in order to facilitate rapid assembly.

Indexed as

Ribosomal ProteinsRNA, RibosomalRibosomesRNA, Ribosomal, 16SRibosomal Proteinsribosomal protein S12RNA, RibosomalRNA, Ribosomal, 16Sco-transcriptional RNA foldingribosomal protein S12ribosome assemblyRNA chaperonessingle-molecule fluorescence

Identifiers

PMID37371531
PMCPMC10296100
OpenAlexW4379799818

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.