Evidence map›Paper›PMID 37370129›Full record

ArticleGenome biology2023

Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion.

Edyta E Wojtowicz, Jayna J Mistry, Vladimir Uzun, Charlotte Hellmich, Anita Scoones, Desmond W Chin, Laura M Kettyle, Francesca Grasso, Allegra M Lord, David J Wright and 10 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 3 countries.

Edyta E WojtowiczEarlham Institute, Norwich Research Park, Norwich, UK. edyta.wojtowicz@earlham.ac.uk.ORCID 0000-0003-0531-2807
Jayna J MistryEarlham Institute, Norwich Research Park, Norwich, UK.
Vladimir UzunEarlham Institute, Norwich Research Park, Norwich, UK.
Charlotte HellmichNorwich Medical School, University of East Anglia, Norwich, UK.
Anita ScoonesEarlham Institute, Norwich Research Park, Norwich, UK.
Desmond W ChinDepartment of Medicine, Huddinge, Center for Hematology and Regenerative Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden.
Laura M KettyleDepartment of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.
Francesca GrassoDepartment of Medicine, Huddinge, Center for Hematology and Regenerative Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden.
Allegra M LordDepartment of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.
David J WrightEarlham Institute, Norwich Research Park, Norwich, UK.
Graham J EtheringtonEarlham Institute, Norwich Research Park, Norwich, UK.
Petter S WollDepartment of Medicine, Huddinge, Center for Hematology and Regenerative Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden.
Mirjam E BelderbosPrincess Maxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Kristian M BowlesNorwich Medical School, University of East Anglia, Norwich, UK.
Claus NerlovMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Wilfried HaertyEarlham Institute, Norwich Research Park, Norwich, UK.
Leonid V BystrykhEuropean Research Institute for the Biology of Ageing (ERIBA), University Medical Center of Groningen (UMCG), University of Groningen, Groningen, The Netherlands.
Sten Eirik W JacobsenDepartment of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden. sten.eirik.jacobsen@ki.se.
Stuart A RushworthNorwich Medical School, University of East Anglia, Norwich, UK. s.rushworth@uea.ac.uk.
Iain C MacaulayEarlham Institute, Norwich Research Park, Norwich, UK. iain.macaulay@earlham.ac.uk.
University of East Anglia · GBKarolinska University Hospital · SENorwich Research Park · GBPrincess Máxima Center · NLUniversity of Groningen · NLUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/CCG1720/1Biotechnology and Biological Sciences Research Council BB/M011216/1Biotechnology and Biological Sciences Research Council BB/R50659X/1Biotechnology and Biological Sciences Research Council BBS/E/T/000PR9816Biotechnology and Biological Sciences Research Council BS/E/T/000PR9818Cancer Research UK 26815Medical Research Council G0801073Medical Research Council MC_UU_00016/5Medical Research Council MC_UU_00016/7Medical Research Council MC_UU_00029/9Medical Research Council MC_UU_12009/5Medical Research Council MC_UU_12009/7Medical Research Council MR/P026028/1Medical Research Council MR/T02934X/1Wellcome TrustWellcome Trust 213731/Z/18/ZWellcome Trust 220534/Z/20/Z
6 · The paper itself

Abstract

backgroundPlatelets and erythrocytes constitute over 95% of all hematopoietic stem cell output. However, the clonal dynamics of HSC contribution to these lineages remains largely unexplored.

resultsWe use lentiviral genetic labeling of mouse hematopoietic stem cells to quantify output from all lineages, nucleate, and anucleate, simultaneously linking these with stem and progenitor cell transcriptomic phenotypes using single-cell RNA-sequencing. We observe dynamic shifts of clonal behaviors through time in same-animal peripheral blood and demonstrate that acute platelet depletion shifts the output of multipotent hematopoietic stem cells to the exclusive production of platelets. Additionally, we observe the emergence of new myeloid-biased clones, which support short- and long-term production of blood cells.

conclusionsOur approach enables kinetic studies of multi-lineage output in the peripheral blood and transcriptional heterogeneity of individual hematopoietic stem cells. Our results give a unique insight into hematopoietic stem cell reactivation upon platelet depletion and of clonal dynamics in both steady state and under stress.

Indexed as

Blood PlateletsHematopoiesisAnimalsCell DifferentiationCell LineageClone CellsHematopoietic Stem CellsKineticsMiceClonal switchingHematopoiesisLineage tracingPlatelet depletionPlatelets

Identifiers

PMID37370129
PMCPMC10294477
OpenAlexW4382278525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.