ArticleBMC plant biology2023
Genome-wide identification and expression analysis of the AUX/IAA gene family in turnip (Brassica rapa ssp. rapa).
Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed, 14 citations in OpenAlex.
- Genome-Wide Identification and Expression Profiling of theInternational journal of molecular sciences · 2025Article
- Genome-wide identification and salt stress-responsive expression profiling of Aux/IAA gene family in Asparagus officinalis.BMC plant biology · 2025Article
- Genome-Wide Identification and Characterization of thePlants (Basel, Switzerland) · 2024Article
- Genome-wide identification of Aux/IAA gene family members in grape and functional analysis of VaIAA3 in response to cold stress.Plant cell reports · 2024Article
- Genome-Wide Analysis of the Auxin/Indoleacetic Acid (International journal of molecular sciences · 2024Article
- Genome-wide characterization, functional analysis, and expression profiling of the Aux/IAA gene family in spinach.BMC genomics · 2024Article
- Article
- Effects of PmaIAA27 and PmaARF15 genes on drought stress tolerance in pinus massoniana.BMC plant biology · 2023Article
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Authors and funding
6 authors at 3 institutions in 1 country.
Funding
Abstract
backgroundAuxin/indoleacetic acid (AUX/IAA) genes encoding short-lived proteins participate in AUX signaling transduction and play crucial roles in plant growth and development. Although the AUX/IAA gene family has been identified in many plants, a systematic analysis of AUX/IAA genes in Brassica rapa ssp. rapa has not yet been reported.
resultsWe performed a comprehensive genome-wide analysis and found 89 AUX/IAA genes in turnip based on the conserved AUX/IAA domain (pfam02309). Phylogenetic analysis of AUX/IAA genes from turnip, Arabidopsis, and cabbage revealed that these genes cluster into six subgroups (A1, A2, A3, A4, B1, and B2). The motif distribution was also conservative among the internal members of the clade. Enhanced yellow fluorescent protein (EYFP) signals of BrrIAA-EYFPs showed that BrrIAA members functioned as nucleoproteins. Moreover, transcriptional analysis revealed that the expression patterns of AUX/IAA genes in turnip were tissue-dependent. Because orthologs have similar biological functions and interaction networks in plant growth and development, BrrIAA66 in turnip possibly played a role in embryo axis formation, vascular development, lateral root formation, and floral organ development by interacting with BrrARF19 and BrrTIR1.
conclusionThese results provide a theoretical basis for further investigation of BrrAUX/IAA genes and lay the foundation for functional analysis of BrrIAA66 in turnip.
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