Evidence map›Paper›PMID 37369761›Full record

ArticleCommunications biology2023

Deep learning enables fast, gentle STED microscopy.

Vahid Ebrahimi, Till Stephan, Jiah Kim, Pablo Carravilla, Christian Eggeling, Stefan Jakobs, Kyu Young Han

Erratum issuedAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Vahid EbrahimiCREOL, The College of Optics and Photonics, University of Central Florida, Orlando, FL, USA.ORCID http://orcid.org/0000-0001-6964-8030
Till StephanDepartment of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Jiah KimDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Pablo CarravillaLeibniz Institute of Photonic Technology e.V., Jena, Germany, member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany.
Christian EggelingLeibniz Institute of Photonic Technology e.V., Jena, Germany, member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany.
Stefan JakobsDepartment of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID http://orcid.org/0000-0002-8028-3121
Kyu Young HanCREOL, The College of Optics and Photonics, University of Central Florida, Orlando, FL, USA. kyhan@creol.ucf.edu.ORCID http://orcid.org/0000-0002-1448-3125

Funding

Identification of the active nuclear niche(s) using novel proteomic, genomic, transgenic, and live-cell microscopy technologiesU01DK127422 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BELMONT, ANDREW STEVEN, HAN, KYU YOUNG · 2020 to 2024
$4.2M
Super-multiplexed fluorescence nanoscopy for imaging-based proteomicsR35GM138039 · NIGMS · UNIVERSITY OF CENTRAL FLORIDA · PI Kyu Young Han · 2020 to 2026
$2.2M
Medical Research Council MC_UU_00008/9Medical Research Council MC_UU_12010/9NIDDK NIH HHS U01 DK127422NIGMS NIH HHS R35 GM138039
6 · The paper itself

Abstract

STED microscopy is widely used to image subcellular structures with super-resolution. Here, we report that restoring STED images with deep learning can mitigate photobleaching and photodamage by reducing the pixel dwell time by one or two orders of magnitude. Our method allows for efficient and robust restoration of noisy 2D and 3D STED images with multiple targets and facilitates long-term imaging of mitochondrial dynamics.

Indexed as

Deep LearningImaging, Three-DimensionalMicroscopy, Fluorescence

Identifiers

PMID37369761
PMCPMC10300082

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.