Evidence map›Paper›PMID 37369644›Full record

ArticleNature communications2023

Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential.

Cedric C S Tan, Jahcub Trew, Thomas P Peacock, Kai Yi Mok, Charlie Hart, Kelvin Lau, Dongchun Ni, C David L Orme, Emma Ransome, William D Pearse and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 8 institutions in 2 countries.

Cedric C S Tan *UCL Genetics Institute, University College London, Gower St, London, WC1E 6BT, UK.ORCID 0000-0003-3536-8465
Jahcub Trew *Georgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK.
Thomas P Peacock *Department of Infectious Disease, Imperial College London, St Marys Medical School, Paddington, London, W2 1PG, UK.ORCID 0000-0001-7077-2928
Kai Yi MokDepartment of Infectious Disease, Imperial College London, St Marys Medical School, Paddington, London, W2 1PG, UK.ORCID 0009-0001-2000-1460
Charlie HartGeorgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK.ORCID 0009-0005-0980-1802
Kelvin LauProtein Production and Structure Core Facility (PTPSP), School of Life Sciences, École Polytechnique Fédérale de Lausanne, Rte Cantonale, 1015, Lausanne, Switzerland.ORCID 0000-0002-9040-7597
Dongchun NiLaboratory of Biological Electron Microscopy (LBEM), School of Basic Science, École Polytechnique Fédérale de Lausanne, Rte Cantonale, 1015, Lausanne, Switzerland.ORCID 0000-0002-3193-6077
C David L OrmeGeorgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK.ORCID 0000-0002-7005-1394
Emma RansomeGeorgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK.
William D PearseGeorgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK.
Christopher M ColemanQueen's Medical Centre, University of Nottingham, Derby Rd, Lenton, Nottingham, NG7 2UH, UK.
Dalan BaileyThe Pirbright Institute, Surrey, GU24 0NF, UK.ORCID 0000-0002-5640-2266
Nazia ThakurThe Pirbright Institute, Surrey, GU24 0NF, UK.ORCID 0000-0002-4450-5911
Jessica L QuantrillDepartment of Infectious Disease, Imperial College London, St Marys Medical School, Paddington, London, W2 1PG, UK.
Ksenia SukhovaDepartment of Infectious Disease, Imperial College London, St Marys Medical School, Paddington, London, W2 1PG, UK.ORCID 0000-0003-3678-5631
Damien RichardUCL Genetics Institute, University College London, Gower St, London, WC1E 6BT, UK.
Laura KahaneGeorgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK.
Guy WoodwardGeorgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK.ORCID 0000-0001-6158-2559
Thomas BellGeorgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK.ORCID 0000-0002-2615-3932
Lisa WorledgeThe Bat Conservation Trust, Studio 15 Cloisters House, Cloisters Business Centre, 8 Battersea Park Road, London, SW8 4BG, UK.ORCID 0000-0001-8800-6981
Joe Nunez-MinoThe Bat Conservation Trust, Studio 15 Cloisters House, Cloisters Business Centre, 8 Battersea Park Road, London, SW8 4BG, UK.
Wendy BarclayDepartment of Infectious Disease, Imperial College London, St Marys Medical School, Paddington, London, W2 1PG, UK.ORCID 0000-0002-3948-0895
Lucy van DorpUCL Genetics Institute, University College London, Gower St, London, WC1E 6BT, UK.ORCID 0000-0002-6211-2310
Francois BallouxUCL Genetics Institute, University College London, Gower St, London, WC1E 6BT, UK.ORCID 0000-0003-1978-7715
Vincent SavolainenGeorgina Mace Centre for the Living Planet, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, UK. v.savolainen@imperial.ac.uk.ORCID 0000-0001-5350-9984
Imperial College London · GBSt Mary's Hospital · GBUniversity College London · GBBat Conservation Trust · GBÉcole Polytechnique Fédérale de Lausanne · CHThe Pirbright Institute · GBThe Francis Crick Institute · GBUniversity of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/I/00007034Biotechnology and Biological Sciences Research Council BBS/E/I/COV07001Medical Research Council MR/W005611/1
6 · The paper itself

Abstract

There has been limited characterisation of bat-borne coronaviruses in Europe. Here, we screened for coronaviruses in 48 faecal samples from 16 of the 17 bat species breeding in the UK, collected through a bat rehabilitation and conservationist network. We recovered nine complete genomes, including two novel coronavirus species, across six bat species: four alphacoronaviruses, a MERS-related betacoronavirus, and four closely related sarbecoviruses. We demonstrate that at least one of these sarbecoviruses can bind and use the human ACE2 receptor for infecting human cells, albeit suboptimally. Additionally, the spike proteins of these sarbecoviruses possess an R-A-K-Q motif, which lies only one nucleotide mutation away from a furin cleavage site (FCS) that enhances infectivity in other coronaviruses, including SARS-CoV-2. However, mutating this motif to an FCS does not enable spike cleavage. Overall, while UK sarbecoviruses would require further molecular adaptations to infect humans, their zoonotic risk warrants closer surveillance.

Indexed as

ChiropteraCOVID-19AnimalsGenomicsHumansPhylogenySARS-CoV-2Spike Glycoprotein, CoronavirusUnited KingdomSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID37369644
PMCPMC10300128
OpenAlexW4382343786

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.