Evidence map›Paper›PMID 37368658›Full record

ArticleToxins2023

Next-Generation Sequencing for Venomics: Application of Multi-Enzymatic Limited Digestion for Inventorying the Snake Venom Arsenal.

Fernanda Gobbi Amorim, Damien Redureau, Thomas Crasset, Lou Freuville, Dominique Baiwir, Gabriel Mazzucchelli, Stefanie K Menzies, Nicholas R Casewell, Loïc Quinton

Open access · goldAbstract read
In one paragraph

Article in Toxins, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Inhibition of bacterial biofilms by the snake venom proteome.Biotechnology reports (Amsterdam, Netherlands) · 2023
    Article
  8. Venomics of the milos viper (Frontiers in molecular biosciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Fernanda Gobbi AmorimLaboratory of Mass Spectrometry, MolSys Research Unit, University of Liège, 4000 Liège, Belgium.ORCID 0000-0003-1453-3185
Damien RedureauLaboratory of Mass Spectrometry, MolSys Research Unit, University of Liège, 4000 Liège, Belgium.
Thomas CrassetLaboratory of Mass Spectrometry, MolSys Research Unit, University of Liège, 4000 Liège, Belgium.
Lou FreuvilleLaboratory of Mass Spectrometry, MolSys Research Unit, University of Liège, 4000 Liège, Belgium.
Dominique BaiwirGIGA Proteomics Facility, University of Liège, 4000 Liège, Belgium.ORCID 0000-0002-1622-0118
Gabriel MazzucchelliLaboratory of Mass Spectrometry, MolSys Research Unit, University of Liège, 4000 Liège, Belgium.ORCID 0000-0002-8757-8133
Stefanie K MenziesCentre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool L3 5QA, UK.ORCID 0000-0002-9273-9296
Nicholas R CasewellCentre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool L3 5QA, UK.ORCID 0000-0002-8035-4719
Loïc QuintonLaboratory of Mass Spectrometry, MolSys Research Unit, University of Liège, 4000 Liège, Belgium.ORCID 0000-0001-8153-9590
University of Liège · BELiverpool School of Tropical Medicine · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To improve the characterization of snake venom protein profiles, we report the application of a new generation of proteomic methodology to deeply characterize complex protein mixtures. The new approach, combining a synergic multi-enzymatic and a time-limited digestion (MELD), is a versatile and straightforward protocol previously developed by our group. The higher number of overlapping peptides generated during MELD increases the quality of downstream peptide sequencing and of protein identification. In this context, this work aims at applying the MELD strategy to a venomics purpose for the first time, and especially for the characterization of snake venoms. We used four venoms as the test models for this proof of concept: two Elapidae (

Indexed as

ProteomicsViperidaeAnimalsDigestionElapidaeElapid VenomsHigh-Throughput Nucleotide SequencingPeptidesProteinsProteomeSnake VenomsTrypsinElapid VenomsPeptidesProteinsProteomeSnake VenomsTrypsinmass spectrometrymulti-enzymatic digestionproteomicsnake venomtoxinvenomics

Identifiers

PMID37368658
PMCPMC10304959
OpenAlexW4378469762

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.