Evidence map›Paper›PMID 37367727›Full record

ArticleThe Journal of antimicrobial chemotherapy2023

Limited emergence of resistance to integrase strand transfer inhibitors (INSTIs) in ART-experienced participants failing dolutegravir-based antiretroviral therapy: a cross-sectional analysis of a Northeast Nigerian cohort.

Adam Abdullahi, Ibrahim Musa Kida, Umar Abdullahi Maina, Amina Husaini Ibrahim, James Mshelia, Haruna Wisso, Abdullahi Adamu, James Ezenwa Onyemata, Martin Edun, Haruna Yusuph and 9 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
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  11. Emergence of Acquired Dolutegravir Resistance in Treatment-experienced People With HIV in Lesotho.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Adam AbdullahiDepartment of Medicine, Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Cambridge, UK.ORCID 0000-0001-9703-8264
Ibrahim Musa KidaDepartment of Infectious Disease and Clinical Immunology, University of Maiduguri, Borno, Nigeria.
Umar Abdullahi MainaDepartment of Veterinary Pharmacology and Toxicology, Faculty of Veterinary Medicine, University of Maiduguri, Borno, Nigeria.
Amina Husaini IbrahimFederal Medical Centre, Abuja, Nigeria.
James MsheliaDepartment of Infectious Disease and Clinical Immunology, University of Maiduguri, Borno, Nigeria.
Haruna WissoInstitute of Human Virology Nigeria, Abuja, Nigeria.
Abdullahi AdamuDepartment of Veterinary Pharmacology and Toxicology, Faculty of Veterinary Medicine, University of Maiduguri, Borno, Nigeria.
James Ezenwa OnyemataInstitute of Human Virology Nigeria, Abuja, Nigeria.
Martin EdunInstitute of Human Virology Nigeria, Abuja, Nigeria.
Haruna YusuphDepartment of Infectious Disease and Clinical Immunology, University of Maiduguri, Borno, Nigeria.
Sani H AliyuDepartment of Microbiology, Addenbrooke's Hospital, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.ORCID 0000-0002-5571-2940
Man CharuratInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, USA.
Alash'le AbimikuInstitute of Human Virology Nigeria, Abuja, Nigeria.
Lucie Abeler-DornerNuffield Department of Medicine, Big Data Institute, University of Oxford, Oxford, UK.
Christophe FraserNuffield Department of Medicine, Big Data Institute, University of Oxford, Oxford, UK.
David BonsallNuffield Department of Medicine, Big Data Institute, University of Oxford, Oxford, UK.
PANGEA consortium
Steven A KempDepartment of Medicine, Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Cambridge, UK.
Ravindra K GuptaDepartment of Medicine, Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Cambridge, UK.ORCID 0000-0001-9751-1808
University of Oxford · GBUniversity of Maiduguri · NGInstitute of Human Virology · NGUniversity of Cambridge · GBCambridge University Hospitals NHS Foundation Trust · GBFederal Medical Centre · NGUniversity of Maryland, Baltimore · US

Funding

Impact of Non - B HIV - 1 Subtype on second line Protease Inhibitor Regimens in Africa (INSPIRE)R01AI147331 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI CHARURAT, MANHATTAN E, NDEMBI, NICAISE · 2020 to 2025
$2.9M
Medical Research Council MC_UU_00033/1NIAID NIH HHS R01 AI147331Wellcome Trust
6 · The paper itself

Abstract

backgroundDue to the high prevalence of resistance to NNRTI-based ART since 2018, consolidated recommendations from the WHO have indicated dolutegravir as the preferred drug of choice for HIV treatment globally. There is a paucity of resistance outcome data from HIV-1 non-B subtypes circulating across West Africa.

aimsWe characterized the mutational profiles of persons living with HIV from a cross-sectional cohort in North-East Nigeria failing a dolutegravir-based ART regimen.

methodsWGS of plasma samples collected from 61 HIV-1-infected participants following virological failure of dolutegravir-based ART were sequenced using the Illumina platform. Sequencing was successfully completed for samples from 55 participants. Following quality control, 33 full genomes were analysed from participants with a median age of 40 years and median time on ART of 9 years. HIV-1 subtyping was performed using SNAPPy.

resultsMost participants had mutational profiles reflective of exposure to previous first- and second-line ART regimens comprised NRTIs and NNRTIs. More than half of participants had one or more drug resistance-associated mutations (DRMs) affecting susceptibility to NRTIs (17/33; 52%) and NNRTIs (24/33; 73%). Almost a quarter of participants (8/33; 24.4%) had one or more DRMs affecting tenofovir susceptibility. Only one participant, infected with HIV-1 subtype G, had evidence of DRMs affecting dolutegravir susceptibility-this was characterized by the T66A, G118R, E138K and R263K mutations.

conclusionsThis study found a low prevalence of resistance to dolutegravir; the data are therefore supportive of the continual rollout of dolutegravir as the primary first-line regimen for ART-naive participants and the preferred switch to second-line ART across the region. However, population-level, longer-term data collection on dolutegravir outcomes are required to further guide implementation and policy action across the region.

Indexed as

HIV InfectionsHIV Integrase InhibitorsAdultCross-Sectional StudiesDolutegravirDrug Resistance, ViralHeterocyclic Compounds, 3-RingHumansIntegrasesMutationOxazinesPyridonesDolutegravirHeterocyclic Compounds, 3-RingHIV Integrase InhibitorsIntegrasesOxazinesPyridones

Identifiers

PMID37367727
PMCPMC10393879
OpenAlexW4382182167

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.