Evidence map›Paper›PMID 37367624›Full record

ReviewJournal of fungi (Basel, Switzerland)2023

OMICS and Other Advanced Technologies in Mycological Applications.

Nalin N Wijayawardene, Nattawut Boonyuen, Chathuranga B Ranaweera, Heethaka K S de Zoysa, Rasanie E Padmathilake, Faarah Nifla, Dong-Qin Dai, Yanxia Liu, Nakarin Suwannarach, Jaturong Kumla and 2 more

Abstract readReview
In one paragraph

Review in Journal of fungi (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Review
  3. Hybrid Whole-Genome Sequencing ofInternational journal of molecular sciences · 2026
    Article
  4. Review
  5. Review
  6. Combined Transcriptomic and Metabolomic Analyses of the Response ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Unraveling bioactive potential and production inChinese herbal medicines · 2025
    Review
  11. Review
  12. Decoding the Tissue-Specific Profiles of Bioactive Compounds inJournal of fungi (Basel, Switzerland) · 2025
    Article
  13. Article
  14. Review
  15. Fungi fromFrontiers in cellular and infection microbiology · 2025
    Article
  16. Comprehensive analysis of the mechanisms conferring resistance to phenamacril in theFrontiers in cellular and infection microbiology · 2025
    Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Nalin N WijayawardeneCentre for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China.ORCID 0000-0003-0522-5498
Nattawut BoonyuenNational Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 111 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand.ORCID 0000-0001-7131-6035
Chathuranga B RanaweeraDepartment of Medical Laboratory Sciences, Faculty of Allied Health Sciences, General Sir John Kotelawala Defence University Sri Lanka, Kandawala Road, Rathmalana 10390, Sri Lanka.
Heethaka K S de ZoysaDepartment of Bioprocess Technology, Faculty of Technology, Rajarata University of Sri Lanka, Mihintale 50300, Sri Lanka.ORCID 0000-0001-6425-7356
Rasanie E PadmathilakeDepartment of Plant Sciences, Faculty of Agriculture, Rajarata University of Sri Lanka, Pulliyankulama, Anuradhapura 50000, Sri Lanka.ORCID 0000-0002-6693-0214
Faarah NiflaDepartment of Bioprocess Technology, Faculty of Technology, Rajarata University of Sri Lanka, Mihintale 50300, Sri Lanka.
Dong-Qin DaiCentre for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China.ORCID 0000-0001-8935-8807
Yanxia LiuGuizhou Academy of Tobacco Science, No.29, Longtanba Road, Guanshanhu District, Guiyang 550000, China.
Nakarin SuwannarachResearch Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand.ORCID 0000-0002-2653-1913
Jaturong KumlaResearch Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand.ORCID 0000-0002-3673-6541
Thushara C BamunuarachchigeDepartment of Bioprocess Technology, Faculty of Technology, Rajarata University of Sri Lanka, Mihintale 50300, Sri Lanka.ORCID 0000-0002-7250-9223
Huan-Huan ChenCentre for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China.

Funding

Agricultural Science and Technology Innovation Program CAAS-ASTIP-2015-IARYunnan Revitalization Talents Support Plan Young Talents" Program and "High-End Foreign Experts" Program
6 · The paper itself

Abstract

Fungi play many roles in different ecosystems. The precise identification of fungi is important in different aspects. Historically, they were identified based on morphological characteristics, but technological advancements such as polymerase chain reaction (PCR) and DNA sequencing now enable more accurate identification and taxonomy, and higher-level classifications. However, some species, referred to as "dark taxa", lack distinct physical features that makes their identification challenging. High-throughput sequencing and metagenomics of environmental samples provide a solution to identifying new lineages of fungi. This paper discusses different approaches to taxonomy, including PCR amplification and sequencing of rDNA, multi-loci phylogenetic analyses, and the importance of various omics (large-scale molecular) techniques for understanding fungal applications. The use of proteomics, transcriptomics, metatranscriptomics, metabolomics, and interactomics provides a comprehensive understanding of fungi. These advanced technologies are critical for expanding the knowledge of the Kingdom of Fungi, including its impact on food safety and security, edible mushrooms foodomics, fungal secondary metabolites, mycotoxin-producing fungi, and biomedical and therapeutic applications, including antifungal drugs and drug resistance, and fungal omics data for novel drug development. The paper also highlights the importance of exploring fungi from extreme environments and understudied areas to identify novel lineages in the fungal dark taxa.

Indexed as

dark taxafungal metabolitesfungal taxonomyhigh-throughput sequencingmultiomics approachesphylogenetic analysis

Identifiers

PMID37367624
PMCPMC10302638

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.