Evidence map›Paper›PMID 37366635›Full record

ArticleThe Plant journal : for cell and molecular biology2023

Altered methionine metabolism impacts phenylpropanoid production and plant development in Arabidopsis thaliana.

Doosan Shin, Veronica C Perez, Gabriella K Dickinson, Haohao Zhao, Ru Dai, Breanna Tomiczek, Keun Ho Cho, Ning Zhu, Jin Koh, Alexander Grenning and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Doosan Shin *Horticultural Sciences Department, University of Florida, Gainesville, FL, 32611, USA.ORCID 0000-0003-1384-4192
Veronica C Perez *Plant Molecular and Cellular Biology Graduate Program, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-3526-2487
Gabriella K DickinsonPlant Molecular and Cellular Biology Graduate Program, University of Florida, Gainesville, FL, USA.ORCID 0000-0001-5599-8849
Haohao ZhaoHorticultural Sciences Department, University of Florida, Gainesville, FL, 32611, USA.ORCID 0000-0002-2969-9404
Ru DaiHorticultural Sciences Department, University of Florida, Gainesville, FL, 32611, USA.ORCID 0000-0002-2040-7049
Breanna TomiczekDepartment of Chemistry, University of Florida, Gainesville, FL, 32611, USA.
Keun Ho ChoHorticultural Sciences Department, University of Florida, Gainesville, FL, 32611, USA.ORCID 0000-0002-8899-4657
Ning ZhuInterdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, 32611, USA.
Jin KohInterdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, 32611, USA.
Alexander GrenningDepartment of Chemistry, University of Florida, Gainesville, FL, 32611, USA.
Jeongim KimHorticultural Sciences Department, University of Florida, Gainesville, FL, 32611, USA.ORCID 0000-0002-5618-3948
University of Florida · US

Funding

New opportunities for the Cope rearrangement: methods, modular synthesis, and applications in drug discoveryR35GM137893 · NIGMS · UNIVERSITY OF MINNESOTA · PI GRENNING, ALEXANDER JAMES · 2020 to 2024
$1.8M
NIGMS NIH HHS R35 GM137893
6 · The paper itself

Abstract

Phenylpropanoids are specialized metabolites derived from phenylalanine. Glucosinolates are defense compounds derived mainly from methionine and tryptophan in Arabidopsis. It was previously shown that the phenylpropanoid pathway and glucosinolate production are metabolically linked. The accumulation of indole-3-acetaldoxime (IAOx), the precursor of tryptophan-derived glucosinolates, represses phenylpropanoid biosynthesis through accelerated degradation of phenylalanine ammonia lyase (PAL). As PAL functions at the entry point of the phenylpropanoid pathway, which produces indispensable specialized metabolites such as lignin, aldoxime-mediated phenylpropanoid repression is detrimental to plant survival. Although methionine-derived glucosinolates in Arabidopsis are abundant, any impact of aliphatic aldoximes (AAOx) derived from aliphatic amino acids such as methionine on phenylpropanoid production remains unclear. Here, we investigate the impact of AAOx accumulation on phenylpropanoid production using Arabidopsis aldoxime mutants, ref2 and ref5. REF2 and REF5 metabolize aldoximes to respective nitrile oxides redundantly, but with different substrate specificities. ref2 and ref5 mutants have decreased phenylpropanoid contents due to the accumulation of aldoximes. As REF2 and REF5 have high substrate specificity toward AAOx and IAOx, respectively, it was assumed that ref2 accumulates AAOx, not IAOx. Our study indicates that ref2 accumulates both AAOx and IAOx. Removing IAOx partially restored phenylpropanoid content in ref2, but not to the wild-type level. However, when AAOx biosynthesis was silenced, phenylpropanoid production and PAL activity in ref2 were completely restored, suggesting an inhibitory effect of AAOx on phenylpropanoid production. Further feeding studies revealed that the abnormal growth phenotype commonly observed in Arabidopsis mutants lacking AAOx production is a consequence of methionine accumulation.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGlucosinolatesMethionineOximesPhenylalanine Ammonia-LyasePlant DevelopmentTryptophanacetaldehyde oximeArabidopsis ProteinsGlucosinolatesMethionineOximesPhenylalanine Ammonia-LyaseTryptophanaldoximesaliphatic aldoximesaliphatic glucosinolatesArabidopsis thalianagrowth and developmentmethioninephenylpropanoids

Identifiers

PMID37366635
PMCPMC11392427
OpenAlexW4382181555

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.