Evidence map›Paper›PMID 37365478›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Visualizing Phagocytic Cargo In Vivo from Engulfment to Resolution in Caenorhabditis elegans.

Gholamreza Fazeli, Julia Frondoni, Shruti Kolli, Ann M Wehman

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Gholamreza FazeliImaging Core Facility, Biocenter, University of Würzburg, Würzburg, Germany.
Julia FrondoniDepartment of Biological Sciences, University of Denver, Denver, CO, USA.
Shruti KolliDepartment of Biological Sciences, University of Denver, Denver, CO, USA.
Ann M WehmanDepartment of Biological Sciences, University of Denver, Denver, CO, USA. ann.wehman@du.edu.
University of Denver · USUniversity of Würzburg · DE

Funding

Mechanisms of non-apoptotic programmed cell death and corpse clearanceR15GM143727 · NIGMS · UNIVERSITY OF DENVER (COLORADO SEMINARY) · PI WEHMAN, ANN M · 2021 to 2021
$436k
NIGMS NIH HHS R15 GM143727
6 · The paper itself

Abstract

The nematode Caenorhabditis elegans offers many experimental advantages to study conserved mechanisms of phagocytosis and phagocytic clearance. These include the stereotyped timing of phagocytic events in vivo for time-lapse imaging, the availability of transgenic reporters labeling molecules involved in different steps of phagocytosis, and the transparency of the animal for fluorescence imaging. Further, the ease of forward and reverse genetics in C. elegans has enabled many of the initial discoveries of proteins involved in phagocytic clearance. In this chapter, we focus on phagocytosis by the large undifferentiated blastomeres of C. elegans embryos, which engulf and eliminate diverse phagocytic cargo from the corpse of the second polar body to cytokinetic midbody remnants. We describe the use of fluorescent time-lapse imaging to observe the distinct steps of phagocytic clearance and methods to normalize this process to distinguish defects in mutant strains. These approaches have enabled us to reveal new insights from the initial signaling to induce phagocytosis up until the final resolution of phagocytic cargo in phagolysosomes.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsApoptosisPhagocytosisPhagosomesCaenorhabditis elegans ProteinsCaenorhabditis elegans embryosFluorescent reportersPhagocytosisPhagolysosome resolutionPhagosome-lysosome fusionPhagosome maturationTime-lapse imaging

Identifiers

PMID37365478
OpenAlexW4382119480

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.