Evidence map›Paper›PMID 37365341›Full record

ArticleNature microbiology2023

D-amino acids signal a stress-dependent run-away response in Vibrio cholerae.

Oihane Irazoki, Josy Ter Beek, Laura Alvarez, André Mateus, Remy Colin, Athanasios Typas, Mikhail M Savitski, Victor Sourjik, Ronnie P-A Berntsson, Felipe Cava

Open access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. [Advancement in neutrophil-based drug delivery systems].Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2025
    Review
  3. Review
  4. Article
  5. Article
  6. Role of a single MCP in evolutionary adaptation ofApplied and environmental microbiology · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. d-Histidine inhibitsJournal of oral microbiology · 2025
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. TagP, a PAAR-domain containing protein, plays roles in the fitness and virulence ofFrontiers in cellular and infection microbiology · 2024
    Article
  17. Run Vibrio, run!Nature reviews. Microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Oihane IrazokiThe Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå Center for Microbial Research (UCMR), Science for Life Laboratory (SciLifeLab), Department of Molecular Biology, Umeå University, Umeå, Sweden.ORCID http://orcid.org/0000-0002-8896-7480
Josy Ter BeekDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå, Sweden.ORCID http://orcid.org/0000-0003-4165-9277
Laura AlvarezThe Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå Center for Microbial Research (UCMR), Science for Life Laboratory (SciLifeLab), Department of Molecular Biology, Umeå University, Umeå, Sweden.ORCID http://orcid.org/0000-0003-2429-7542
André MateusGenome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-6870-0677
Remy ColinMax Planck Institute for Terrestrial Microbiology, and Center for Synthetic Microbiology (SYNMIKRO), Marburg, Germany.ORCID http://orcid.org/0000-0001-9051-8003
Athanasios TypasGenome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-0797-9018
Mikhail M SavitskiGenome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-2011-9247
Victor SourjikMax Planck Institute for Terrestrial Microbiology, and Center for Synthetic Microbiology (SYNMIKRO), Marburg, Germany.ORCID http://orcid.org/0000-0003-1053-9192
Ronnie P-A BerntssonDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå, Sweden.ORCID http://orcid.org/0000-0001-6848-322X
Felipe CavaThe Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå Center for Microbial Research (UCMR), Science for Life Laboratory (SciLifeLab), Department of Molecular Biology, Umeå University, Umeå, Sweden. felipe.cava@umu.se.ORCID http://orcid.org/0000-0001-5995-718X
European Molecular Biology Laboratory · DEScience for Life Laboratory · SELoewe Center for Synthetic Microbiology · DEUmeå University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To explore favourable niches while avoiding threats, many bacteria use a chemotaxis navigation system. Despite decades of studies on chemotaxis, most signals and sensory proteins are still unknown. Many bacterial species release D-amino acids to the environment; however, their function remains largely unrecognized. Here we reveal that D-arginine and D-lysine are chemotactic repellent signals for the cholera pathogen Vibrio cholerae. These D-amino acids are sensed by a single chemoreceptor MCP

Indexed as

Vibrio choleraeAmino AcidsArginineBacteriaBacterial ProteinsLysineAmino AcidsArginineBacterial ProteinsLysine

Identifiers

PMID37365341
PMCPMC10390336
OpenAlexW4382055191

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.