Evidence map›Paper›PMID 37365251›Full record

ArticleScientific reports2023

Amino acid positions near the active site determine the reduced activity of human ACOD1 compared to murine ACOD1.

Fangfang Chen, Israfil Yalcin, Mingming Zhao, Chutao Chen, Wulf Blankenfeldt, Frank Pessler, Konrad Büssow

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Itaconate modifications: Mechanisms and applications.Journal of intensive medicine · 2026
    Review
  5. Review
  6. Article
  7. Metabolic Messengers: itaconate.Nature metabolism · 2024
    Review
  8. Article
  9. Divergent effects of itaconate isomers onFrontiers in immunology · 2024
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Fangfang Chen *Department of Structure and Function of Proteins, Helmholtz Centre for Infection Research, Braunschweig, Germany.ORCID 0000-0001-7396-4052
Israfil Yalcin *Department of Structure and Function of Proteins, Helmholtz Centre for Infection Research, Braunschweig, Germany.
Mingming ZhaoDepartment of Structure and Function of Proteins, Helmholtz Centre for Infection Research, Braunschweig, Germany.
Chutao ChenResearch Group Biomarkers for Infectious Diseases, TWINCORE Centre for Experimental and Clinical Infection Research, a Joint Venture Between Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany.
Wulf BlankenfeldtDepartment of Structure and Function of Proteins, Helmholtz Centre for Infection Research, Braunschweig, Germany.ORCID 0000-0001-9886-9668
Frank PesslerResearch Group Biomarkers for Infectious Diseases, TWINCORE Centre for Experimental and Clinical Infection Research, a Joint Venture Between Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany.ORCID 0000-0002-3434-2311
Konrad BüssowDepartment of Structure and Function of Proteins, Helmholtz Centre for Infection Research, Braunschweig, Germany. konrad.buessow@helmholtz-hzi.de.ORCID 0000-0003-2031-5942
Helmholtz Centre for Infection Research · DEMedizinische Hochschule Hannover · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

cis-Aconitate decarboxylase (ACOD1, IRG1) converts cis-aconitate to the immunomodulatory and antibacterial metabolite itaconate. Although the active site residues of human and mouse ACOD1 are identical, the mouse enzyme is about fivefold more active. Aiming to identify the cause of this difference, we mutated positions near the active site in human ACOD1 to the corresponding residues of mouse ACOD1 and measured resulting activities in vitro and in transfected cells. Interestingly, Homo sapiens is the only species with methionine instead of isoleucine at residue 154 and introduction of isoleucine at this position increased the activity of human ACOD1 1.5-fold in transfected cells and 3.5-fold in vitro. Enzyme activity of gorilla ACOD1, which is almost identical to the human enzyme but has isoleucine at residue 154, was similar to the mouse enzyme in vitro. Met154 in human ACOD1 forms a sulfur-π bond to Phe381, which is positioned to impede access of the substrate to the active site. It appears that the ACOD1 sequence has changed at position 154 during human evolution, resulting in a pronounced decrease in activity. This change might have offered a selective advantage in diseases such as cancer.

Indexed as

Amino AcidsCarboxy-LyasesIsoleucineAnimalsCatalytic DomainHumansHydro-LyasesMiceACOD1 protein, humanAcod1 protein, mouseAmino AcidsCarboxy-LyasesHydro-LyasesIsoleucine

Identifiers

PMID37365251
PMCPMC10293213
OpenAlexW4382139150

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.