Evidence map›Paper›PMID 37364986›Full record

ArticleGenes & development2023

Major β cell-specific functions of NKX2.2 are mediated via the NK2-specific domain.

Vladimir Abarinov, Joshua A Levine, Angela J Churchill, Bryce Hopwood, Cailin S Deiter, Michelle A Guney, Kristen L Wells, Jessica M Schrunk, Yuchun Guo, Jennifer Hammelman and 4 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Vladimir AbarinovDepartment of Genetics and Development, Columbia University, New York, New York 10032, USA.
Joshua A LevineDepartment of Genetics and Development, Columbia University, New York, New York 10032, USA.
Angela J ChurchillDepartment of Genetics and Development, Columbia University, New York, New York 10032, USA.
Bryce HopwoodBarbara Davis Center for Diabetes, University of Colorado Anschutz Medical Campus, Aurora, Colorado 80045, USA.
Cailin S DeiterBarbara Davis Center for Diabetes, University of Colorado Anschutz Medical Campus, Aurora, Colorado 80045, USA.
Michelle A GuneyBarbara Davis Center for Diabetes, University of Colorado Anschutz Medical Campus, Aurora, Colorado 80045, USA.
Kristen L WellsBarbara Davis Center for Diabetes, University of Colorado Anschutz Medical Campus, Aurora, Colorado 80045, USA.
Jessica M SchrunkBarbara Davis Center for Diabetes, University of Colorado Anschutz Medical Campus, Aurora, Colorado 80045, USA.
Yuchun GuoComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Jennifer HammelmanComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
David K GiffordComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Mark A MagnusonDepartment of Molecular Physiology and Biophysics, Center for Stem Cell Biology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.ORCID 0000-0002-8824-6499
Hynek WichterleDepartment of Pathology and Cell Biology, Columbia University, New York, New York 10032, USA.
Lori SusselDepartment of Genetics and Development, Columbia University, New York, New York 10032, USA; lori.sussel@cuanschutz.edu.ORCID 0000-0003-4672-7304
University of Colorado Anschutz Medical Campus · USColumbia University · USMassachusetts Institute of Technology · USVanderbilt University · US

Funding

UCHSC DIABETES ENDOCRINOLOGY RESEARCH CENTERP30DK057516 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI HUTTON, JOHN C · 2000 to 2010
$14.0M
Regulation of Pancreatic Islet Cell FateR01DK082590 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI LORI SUSSEL · 2009 to 2026
$7.3M
PREDOCTORAL TRAINING GRANT IN HUMAN GENETICS &DEVELOPMET32GM007088 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SHEN, MICHAEL M. · 1985 to 2020
$7.1M
Intersection of signaling pathways and transcription factors regulating islet developmentR01DK118155 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI PAUL J GADUE, David Lorberbaum · 2018 to 2026
$4.9M
Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Alternative RNA splicing events contribute to the onset of islet dysfunction in T1DU01DK127505 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI NAKAYASU, ERNESTO SATOSHI, SUSSEL, LORI · 2020 to 2023
$2.9M
Distal enhancers controlling motor neuron gene expression programR01NS109217 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WICHTERLE, HYNEK · 2019 to 2022
$2.1M
Transcriptional Control of Motor Neuron MaturationR01NS116141 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WICHTERLE, HYNEK · 2020 to 2024
$1.9M
Stable silencing of spinal motor neuron enhancers by transiently expressed Nkx2.2R21NS092043 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WICHTERLE, HYNEK · 2015 to 2016
$433k
Regulation of motor neuron enhancers by the transcription factor Nkx2.2F31NS092246 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ABARINOV, ELENA · 2015 to 2016
$66k
NIDDK NIH HHS P30 DK057516NIDDK NIH HHS R01 DK082590NIDDK NIH HHS R01 DK118155NIDDK NIH HHS U01 DK127505NIGMS NIH HHS T32 GM007088NIGMS NIH HHS T32 GM087237NINDS NIH HHS F31 NS092246NINDS NIH HHS R01 NS109217NINDS NIH HHS R01 NS116141NINDS NIH HHS R21 NS092043
6 · The paper itself

Abstract

The consolidation of unambiguous cell fate commitment relies on the ability of transcription factors (TFs) to exert tissue-specific regulation of complex genetic networks. However, the mechanisms by which TFs establish such precise control over gene expression have remained elusive-especially in instances in which a single TF operates in two or more discrete cellular systems. In this study, we demonstrate that β cell-specific functions of NKX2.2 are driven by the highly conserved NK2-specific domain (SD). Mutation of the endogenous NKX2.2 SD prevents the developmental progression of β cell precursors into mature, insulin-expressing β cells, resulting in overt neonatal diabetes. Within the adult β cell, the SD stimulates β cell performance through the activation and repression of a subset of NKX2.2-regulated transcripts critical for β cell function. These irregularities in β cell gene expression may be mediated via SD-contingent interactions with components of chromatin remodelers and the nuclear pore complex. However, in stark contrast to these pancreatic phenotypes, the SD is entirely dispensable for the development of NKX2.2-dependent cell types within the CNS. Together, these results reveal a previously undetermined mechanism through which NKX2.2 directs disparate transcriptional programs in the pancreas versus neuroepithelium.

Indexed as

Homeodomain ProteinsInsulin-Secreting CellsCell DifferentiationHomeobox Protein Nkx-2.2Transcription FactorsZebrafish ProteinsHomeobox Protein Nkx-2.2Homeodomain ProteinsTranscription FactorsZebrafish ProteinsNKX2.2pancreatic isletspinal cordtranscriptional regulationβ cells

Identifiers

PMID37364986
PMCPMC10393193
OpenAlexW4382055135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.