Evidence map›Paper›PMID 37364635›Full record

ArticleClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases2023

The problem of Mycobacterium abscessus complex: multi-drug resistance, bacteriophage susceptibility and potential healthcare transmission.

Rebekah M Dedrick, Lawrence Abad, Nathaniel Storey, Ari M Kaganovsky, Bailey E Smith, Haley A Aull, Madison Cristinziano, Anna Morkowska, Saraswathi Murthy, Michael R Loebinger and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  3. Interleukin-6 fromMicrobiology spectrum · 2026
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  4. Infantile pulmonary abscess due toFrontiers in pediatrics · 2026
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  6. Integrative genomic and clinical analysis of carbapenem-resistant and susceptibleFrontiers in cellular and infection microbiology · 2026
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  8. Phosphatidylserine liposomes forFrontiers in immunology · 2026
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  9. BioluminescentFrontiers in cellular and infection microbiology · 2026
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  14. Article
  15. Mycobacteriophages and Their Applications.Antibiotics (Basel, Switzerland) · 2024
    Review
  16. Article
  17. Review
  18. Exploring antibiotic resistance mechanisms inFrontiers in microbiology · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Rebekah M DedrickDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Lawrence AbadDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Nathaniel StoreyDepartment of Microbiology, Virology and Infection Control, Great Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
Ari M KaganovskyDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Bailey E SmithDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Haley A AullDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Madison CristinzianoDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Anna MorkowskaMicrobiology, North West London Pathology, London, UK.
Saraswathi MurthyRoyal Brompton and Harefield Hospitals, Guys and St Thomas's NHS Foundation Trust, London, UK.
Michael R LoebingerRoyal Brompton and Harefield Hospitals, Guys and St Thomas's NHS Foundation Trust, London, UK; National Heart and Lung Institute, Imperial College London, London, UK.
Graham F HatfullDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Giovanni SattaCentre for Clinical Microbiology, University College London, London, UK; Infection Division, University College London Hospitals NHS Foundation Trust, London, UK. Electronic address: g.satta@ucl.ac.uk.
University of Pittsburgh · USRoyal Brompton & Harefield NHS Foundation Trust · GBGreat Ormond Street Hospital for Children NHS Foundation Trust · GBNorth West London Pathology · GBUniversity College London Hospitals NHS Foundation Trust · GB

Funding

Bacteriophage diversity, dynamics, function, and exploitationR35GM131729 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Graham F. Hatfull · 2019 to 2026
$3.6M
Medical Research Council MR/T023686/2NIGMS NIH HHS R35 GM131729
6 · The paper itself

Abstract

objectivesMycobacterium abscessus complex is responsible for 2.6-13.0% of all non-tuberculous mycobacterial pulmonary infections and these are notoriously difficult to treat due to the complex regimens required, drug resistance and adverse effects. Hence, bacteriophages have been considered in clinical practice as an additional treatment option. Here, we evaluated antibiotic and phage susceptibility profiles of M. abscessus clinical isolates. Whole-genome sequencing (WGS) revealed the phylogenetic relationships, dominant circulating clones (DCCs), the likelihood of patient-to-patient transmission and the presence of prophages.

methodsAntibiotic susceptibility testing was performed using CLSI breakpoints (n = 95), and plaque assays were used for phage susceptibility testing (subset of n = 88, 35 rough and 53 smooth morphology). WGS was completed using the Illumina platform and analysed using Snippy/snp-dists and Discovery and Extraction of Phages Tool (DEPhT).

resultsAmikacin and Tigecycline were the most active drugs (with 2 strains resistant to amikacin, and one strain with Tigecycline MIC of 4 μg/mL). Most strains were resistant to all other drugs tested, with Linezolid and Imipenem showing the least resistance, at 38% (36/95) and 55% (52/95), respectively. Rough colony morphotype strains were more phage-susceptible than smooth strains (77%-27/35 versus 48%-25/53 in the plaque assays, but smooth strains are not killed efficiently by those phages in liquid infection assay). We have also identified 100 resident prophages, some of which were propagated lytically. DCC1 (20%-18/90) and DCC4 (22%-20/90) were observed to be the major clones and WGS identified 6 events of possible patient-to-patient transmission. DISCUSSION: Many strains of M. abscessus complex are intrinsically resistant to available antibiotics and bacteriophages represent an alternative therapeutic option, but only for strains with rough morphology. Further studies are needed to elucidate the role of hospital-borne M. abscessus transmission.

Indexed as

BacteriophagesMycobacterium abscessusMycobacterium Infections, NontuberculousAmikacinAnti-Bacterial AgentsDelivery of Health CareDrug Resistance, MultipleHumansMicrobial Sensitivity TestsPhylogenyTigecyclineAmikacinAnti-Bacterial AgentsTigecyclineBacteriophagesMulti-drug resistanceMycobacterium abscessus complexNext-generation sequencingProphages

Identifiers

PMID37364635
PMCPMC10583746
OpenAlexW4381888131

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.