Evidence map›Paper›PMID 37364125›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

De novo designed ice-binding proteins from twist-constrained helices.

Robbert J de Haas, Roderick P Tas, Daniëlle van den Broek, Chuanbao Zheng, Hannah Nguyen, Alex Kang, Asim K Bera, Neil P King, Ilja K Voets, Renko de Vries

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Inhibition of ice recrystallization with designed twistless helical repeat proteins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Robbert J de HaasDepartment of Physical Chemistry and Soft Matter, Wageningen University and Research, Wageningen, WE 6708, The Netherlands.
Roderick P TasLaboratory of Self-Organizing Soft Matter, Department of Chemical Engineering and Chemistry and Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven, MB 5600, The Netherlands.ORCID 0000-0003-3111-8784
Daniëlle van den BroekLaboratory of Self-Organizing Soft Matter, Department of Chemical Engineering and Chemistry and Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven, MB 5600, The Netherlands.
Chuanbao ZhengDepartment of Physical Chemistry and Soft Matter, Wageningen University and Research, Wageningen, WE 6708, The Netherlands.ORCID 0000-0002-0866-9839
Hannah NguyenDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0001-9696-4004
Alex KangDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0001-5487-0499
Asim K BeraDepartment of Biochemistry, University of Washington, Seattle, WA 98195.
Neil P KingDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0002-2978-4692
Ilja K VoetsLaboratory of Self-Organizing Soft Matter, Department of Chemical Engineering and Chemistry and Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven, MB 5600, The Netherlands.ORCID 0000-0003-3543-4821
Renko de VriesDepartment of Physical Chemistry and Soft Matter, Wageningen University and Research, Wageningen, WE 6708, The Netherlands.

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI MALCOLM S. CAPEL · 2018 to 2026
$34.2M
NIGMS NIH HHS P30 GM124165
6 · The paper itself

Abstract

Attaining molecular-level control over solidification processes is a crucial aspect of materials science. To control ice formation, organisms have evolved bewildering arrays of ice-binding proteins (IBPs), but these have poorly understood structure-activity relationships. We propose that reverse engineering using de novo computational protein design can shed light on structure-activity relationships of IBPs. We hypothesized that the model alpha-helical winter flounder antifreeze protein uses an unusual undertwisting of its alpha-helix to align its putative ice-binding threonine residues in exactly the same direction. We test this hypothesis by designing a series of straight three-helix bundles with an ice-binding helix projecting threonines and two supporting helices constraining the twist of the ice-binding helix. Our findings show that ice-recrystallization inhibition by the designed proteins increases with the degree of designed undertwisting, thus validating our hypothesis, and opening up avenues for the computational design of IBPs.

Indexed as

FlounderIceAnimalsAntifreeze ProteinsCaspase 1Antifreeze ProteinsCaspase 1Iceice-binding proteinsice-recrystallization inhibitionprotein design

Identifiers

PMID37364125
PMCPMC10319034

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.