Evidence map›Paper›PMID 37358474›Full record

ArticleThe Journal of cell biology2023

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin.

Sanjeev K Choudhry, Maxwell L Neal, Song Li, Arti T Navare, Trevor Van Eeuwen, Richard W Wozniak, Fred D Mast, Michael P Rout, John D Aitchison

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  12. Article
  13. Inheritance of epigenetic transcriptional memory.Current opinion in genetics & development · 2024
    Review
  14. The Molecular Architecture of the Nuclear Basket.bioRxiv : the preprint server for biology · 2024
    Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Sanjeev K ChoudhryCenter for Global Infectious Disease Research, Seattle Children's Research Institute , Seattle, WA, USA.ORCID 0000-0003-2685-9940
Maxwell L NealCenter for Global Infectious Disease Research, Seattle Children's Research Institute , Seattle, WA, USA.ORCID 0000-0002-2390-6572
Song LiCenter for Global Infectious Disease Research, Seattle Children's Research Institute , Seattle, WA, USA.ORCID 0009-0007-6179-7673
Arti T NavareCenter for Global Infectious Disease Research, Seattle Children's Research Institute , Seattle, WA, USA.ORCID 0000-0002-7171-2406
Trevor Van EeuwenLaboratory of Cellular and Structural Biology, The Rockefeller University , New York, NY, USA.ORCID 0000-0003-0549-1702
Richard W WozniakDepartment of Cell Biology, University of Alberta, Edmonton, Canada.ORCID 0000-0003-2328-0247
Fred D MastCenter for Global Infectious Disease Research, Seattle Children's Research Institute , Seattle, WA, USA.ORCID 0000-0002-2177-6647
Michael P RoutLaboratory of Cellular and Structural Biology, The Rockefeller University , New York, NY, USA.ORCID 0000-0003-2010-706X
John D AitchisonCenter for Global Infectious Disease Research, Seattle Children's Research Institute , Seattle, WA, USA.ORCID 0000-0002-9153-6497
Infectious Disease Research Institute · USRockefeller University · USUniversity of Alberta · CA

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
Structure-Function Mapping of the Nuclear Pore Complex-RenewalR01GM112108 · NIGMS · ROCKEFELLER UNIVERSITY · PI JOHN D. AITCHISON, MICHAEL P ROUT · 2015 to 2026
$9.1M
NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM112108
6 · The paper itself

Abstract

The nuclear pore complex (NPC) physically interacts with chromatin and regulates gene expression. The Saccharomyces cerevisiae inner ring nucleoporin Nup170 has been implicated in chromatin organization and the maintenance of gene silencing in subtelomeric regions. To gain insight into how Nup170 regulates this process, we used protein-protein interactions, genetic interactions, and transcriptome correlation analyses to identify the Ctf18-RFC complex, an alternative proliferating cell nuclear antigen (PCNA) loader, as a facilitator of the gene regulatory functions of Nup170. The Ctf18-RFC complex is recruited to a subpopulation of NPCs that lack the nuclear basket proteins Mlp1 and Mlp2. In the absence of Nup170, PCNA levels on DNA are reduced, resulting in the loss of silencing of subtelomeric genes. Increasing PCNA levels on DNA by removing Elg1, which is required for PCNA unloading, rescues subtelomeric silencing defects in nup170Δ. The NPC, therefore, mediates subtelomeric gene silencing by regulating PCNA levels on DNA.

Indexed as

ChromatinGene SilencingNuclear PoreProliferating Cell Nuclear AntigenSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomereCarrier ProteinsDNA, FungalNuclear Pore Complex ProteinsRNA-Binding ProteinsCarrier ProteinsChromatinCTF18 protein, S cerevisiaeDNA, FungalElg1 protein, S cerevisiaeMLP1 protein, S cerevisiaeMLP2 protein, S cerevisiaeNuclear Pore Complex ProteinsNUP170 protein, S cerevisiaeProliferating Cell Nuclear AntigenRNA-Binding ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID37358474
PMCPMC10292210
OpenAlexW4382010962

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.