Evidence map›Paper›PMID 37358458›Full record

ArticleMicrobiology spectrum2023

Variability of Inverted Repeats in All Available Genomes of Bacteria.

Otília Porubiaková, Jan Havlík, Indu, Michal Šedý, Veronika Přepechalová, Martin Bartas, Stefan Bidula, Jiří Šťastný, Miroslav Fojta, Václav Brázda

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Otília PorubiakováInstitute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
Jan HavlíkMendel University in Brno, Brno, Czech Republic.
InduInstitute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
Michal ŠedýBrno University of Technology, Faculty of Chemistry, Brno, Czech Republic.
Veronika PřepechalováInstitute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
Martin BartasDepartment of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
Stefan BidulaSchool of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, United Kingdom.
Jiří ŠťastnýMendel University in Brno, Brno, Czech Republic.
Miroslav FojtaInstitute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
Václav BrázdaInstitute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.ORCID 0000-0003-2837-4226
Czech Academy of Sciences · CZCzech Academy of Sciences, Institute of Biophysics · CZMendel University in Brno · CZBrno University of Technology · CZMasaryk University · CZUniversity of East Anglia · GBUniversity of Ostrava · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Noncanonical secondary structures in nucleic acids have been studied intensively in recent years. Important biological roles of cruciform structures formed by inverted repeats (IRs) have been demonstrated in diverse organisms, including humans. Using Palindrome analyser, we analyzed IRs in all accessible bacterial genome sequences to determine their frequencies, lengths, and localizations. IR sequences were identified in all species, but their frequencies differed significantly across various evolutionary groups. We detected 242,373,717 IRs in all 1,565 bacterial genomes. The highest mean IR frequency was detected in the

Indexed as

DNA ReplicationGenomicsBacteriaBase SequenceHumansPhylogenybacteria domainbacterial genome analysisinverted repeatsPalindrome analyser

Identifiers

PMID37358458
PMCPMC10434271
OpenAlexW4382011822

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.