Evidence map›Paper›PMID 37358418›Full record

ArticleMicrobiology spectrum2023

Investigating the Genetic Diversity of H5 Avian Influenza Viruses in the United Kingdom from 2020-2022.

Alexander M P Byrne, Joe James, Benjamin C Mollett, Stephanie M Meyer, Thomas Lewis, Magdalena Czepiel, Amanda H Seekings, Sahar Mahmood, Saumya S Thomas, Craig S Ross and 10 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 57 citations in OpenAlex.

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  17. Rapid mortality in captive bush dogs (Emerging microbes & infections · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 1 country.

Alexander M P ByrneVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.ORCID 0000-0002-7448-8200
Joe JamesVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.ORCID 0000-0002-9673-3684
Benjamin C MollettVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Stephanie M MeyerVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Thomas LewisVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Magdalena CzepielVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Amanda H SeekingsVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Sahar MahmoodVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Saumya S ThomasVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Craig S RossVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Dominic J F ByrneSchool of Biological Sciences, University of Manchester, Manchester, United Kingdom.
Michael J McMenamyAgri-Food and Bioscience Institute, Belfast, United Kingdom.
Valerie BailieAgri-Food and Bioscience Institute, Belfast, United Kingdom.
Ken LemonAgri-Food and Bioscience Institute, Belfast, United Kingdom.
Rowena D E HansenVeterinary Exotics and Notifiable Disease Unit, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Marco FalchieriVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Nicola S LewisDepartment of Pathology and Population Sciences, Royal Veterinary College, University of London, Hertfordshire, United Kingdom.
Scott M ReidVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Ian H BrownVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.
Ashley C BanyardVirology Department, Animal and Plant Health Agency, Addlestone, Surrey, United Kingdom.ORCID 0000-0002-1286-9825
Animal and Plant Health Agency · GBAgri Food and Biosciences Institute · GBUniversity of London · GBUniversity of Manchester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since 2020, the United Kingdom and Europe have experienced annual epizootics of high-pathogenicity avian influenza virus (HPAIV). The first epizootic, during the autumn/winter of 2020-2021, involved six H5Nx subtypes, although H5N8 HPAIV dominated in the United Kingdom. While genetic assessments of the H5N8 HPAIVs within the United Kingdom demonstrated relative homogeneity, there was a background of other genotypes circulating at a lower degree with different neuraminidase and internal genes.  Following a small number of detections of H5N1 in wild birds over the summer of 2021, the autumn/winter of 2021-2022 saw another European H5 HPAIV epizootic that dwarfed the prior epizootic. This second epizootic was dominated almost exclusively by H5N1 HPAIV, although six distinct genotypes were defined. We have used genetic analysis to evaluate the emergence of different genotypes and proposed reassortment events that have been observed. The existing data suggest that the H5N1 viruses circulating in Europe during late 2020 continued to circulate in wild birds throughout 2021, with minimal adaptation, but then went on to reassort with AIVs in the wild bird population. We have undertaken an in-depth genetic assessment of H5 HPAIVs detected in the United Kingdom over two winter seasons and demonstrate the utility of in-depth genetic analyses in defining the diversity of H5 HPAIVs circulating in avian species, the potential for zoonotic risk, and whether incidents of lateral spread can be defined over independent incursions of infections from wild birds. This provides key supporting data for mitigation activities.

Indexed as

Influenza A virusInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsAnimalsAnimals, WildBirdsGenetic VariationHumansPhylogenyPoultryUnited Kingdomavian influenzagenomicshigh-pathogenicityWGS

Identifiers

PMID37358418
PMCPMC10433820
OpenAlexW4382010998

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.