Evidence map›Paper›PMID 37354456›Full record

ArticlePlant & cell physiology2023

MYB-bHLH-TTG1 in a Multi-tiered Pathway Regulates Arabidopsis Seed Coat Mucilage Biosynthesis Genes Including PECTIN METHYLESTERASE INHIBITOR14 Required for Homogalacturonan Demethylesterification.

Patrick J Allen, Ross S Napoli, Roger W Parish, Song Feng Li

Open access · hybridAbstract read
In one paragraph

Article in Plant & cell physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Patrick J AllenDepartment of Animal, Plant and Soil Sciences, AgriBio, Centre for AgriBiosciences, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Melbourne, Victoria 3086, Australia.ORCID 0000-0003-0548-1061
Ross S NapoliDepartment of Animal, Plant and Soil Sciences, AgriBio, Centre for AgriBiosciences, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Melbourne, Victoria 3086, Australia.
Roger W ParishDepartment of Animal, Plant and Soil Sciences, AgriBio, Centre for AgriBiosciences, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Melbourne, Victoria 3086, Australia.
Song Feng LiDepartment of Animal, Plant and Soil Sciences, AgriBio, Centre for AgriBiosciences, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Melbourne, Victoria 3086, Australia.
La Trobe University · AUThe University of Melbourne · AU

Funding

Australian Government Research Training Program N/AAustralian Research Council N/AGrains Research and Development Corporation N/ALa Trobe University N/A
6 · The paper itself

Abstract

MYB-bHLH-TTG1 (MBW) transcription factor (TF) complexes regulate Arabidopsis seed coat biosynthesis pathways via a multi-tiered regulatory mechanism. The MYB genes include MYB5, MYB23 and TRANSPARENT TESTA2 (TT2), which regulate GLABRA2 (GL2), HOMEODOMAIN GLABROUS2 (HDG2) and TRANSPARENT TESTA GLABRA2 (TTG2). Here, we examine the role of PECTIN METHYLESTERASE INHIBITOR14 (PMEI14) in seed coat mucilage pectin methylesterification and provide evidence in support of multi-tiered regulation of seed coat mucilage biosynthesis genes including PMEI14. The PMEI14 promoter was active in the seed coat and developing embryo. A pmei14 mutant exhibited stronger attachment of the outer layer of seed coat mucilage, increased mucilage homogalacturonan demethylesterification and reduced seed coat radial cell wall thickness, results consistent with decreased PMEI activity giving rise to increased PME activity. Reduced mucilage release from the seeds of myb5, myb23, tt2 and gl2, hdg2, ttg2 triple mutants indicated that HDG2 and MYB23 play minor roles in seed coat mucilage deposition. Chromatin immunoprecipitation analysis found that MYB5, TT8 and seven mucilage pathway structural genes are directly regulated by MYB5. Expression levels of GL2, HDG2, TTG2 and nine mucilage biosynthesis genes including PMEI14 in the combinatorial mutant seeds indicated that these genes are positively regulated by at least two of those six TFs and that TTG1 and TTG2 are major regulators of PMEI14 expression. Our results show that MYB-bHLH-TTG1 complexes regulate mucilage biosynthesis genes, including PMEI14, both directly and indirectly via a three-tiered mechanism involving GL2, HDG2 and TTG2.

Indexed as

ArabidopsisArabidopsis ProteinsPlant MucilageCarboxylic Ester HydrolasesDNA-Binding ProteinsGene Expression Regulation, PlantMutationPectinsSeedsArabidopsis ProteinsCarboxylic Ester HydrolasesDNA-Binding ProteinspectinesterasePectinsPlant Mucilagepolygalacturonic acidTTG1 protein, ArabidopsisArabidopsis thalianaCell wallsMBWMucilagePectinPMEISeed coatTranscription factorsTTG1

Identifiers

PMID37354456
PMCPMC10434736
OpenAlexW4381853920

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.