Evidence map›Paper›PMID 37353594›Full record

ArticleCommunications biology2023

NUP98 and RAE1 sustain progenitor function through HDAC-dependent chromatin targeting to escape from nucleolar localization.

Amy E Neely, Laura A Blumensaadt, Patric J Ho, Sarah M Lloyd, Junghun Kweon, Ziyou Ren, Xiaomin Bao

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Amy E NeelyDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.
Laura A BlumensaadtDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.
Patric J HoDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.
Sarah M LloydDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.ORCID 0000-0001-6197-1482
Junghun KweonDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.
Ziyou RenDepartment of Dermatology, Northwestern University, Chicago, IL, USA.
Xiaomin BaoDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA. xiaomin.bao@northwestern.edu.ORCID 0000-0002-8845-5012
Northwestern University · US

Funding

CARCINOGENESIS TRAINING PROGRAMT32CA009560 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Kathleen Janee Green · 1986 to 2026
$8.4M
Epidermal Gene Regulation by Transcription Elongation and TerminationR01AR075015 · NIAMS · NORTHWESTERN UNIVERSITY · PI BAO, XIAOMIN · 2020 to 2024
$1.7M
NCI NIH HHS T32 CA009560NIAMS NIH HHS R01 AR075015
6 · The paper itself

Abstract

Self-renewing somatic tissues rely on progenitors to support the continuous tissue regeneration. The gene regulatory network maintaining progenitor function remains incompletely understood. Here we show that NUP98 and RAE1 are highly expressed in epidermal progenitors, forming a separate complex in the nucleoplasm. Reduction of NUP98 or RAE1 abolishes progenitors' regenerative capacity, inhibiting proliferation and inducing premature terminal differentiation. Mechanistically, NUP98 binds on chromatin near the transcription start sites of key epigenetic regulators (such as DNMT1, UHRF1 and EZH2) and sustains their expression in progenitors. NUP98's chromatin binding sites are co-occupied by HDAC1. HDAC inhibition diminishes NUP98's chromatin binding and dysregulates NUP98 and RAE1's target gene expression. Interestingly, HDAC inhibition further induces NUP98 and RAE1 to localize interdependently to the nucleolus. These findings identified a pathway in progenitor maintenance, where HDAC activity directs the high levels of NUP98 and RAE1 to directly control key epigenetic regulators, escaping from nucleolar aggregation.

Indexed as

ChromatinNucleocytoplasmic Transport ProteinsBinding SitesNuclear Matrix-Associated ProteinsNuclear Pore Complex ProteinsChromatinNuclear Matrix-Associated Proteinsnuclear pore complex protein 98Nuclear Pore Complex ProteinsNucleocytoplasmic Transport Proteins

Identifiers

PMID37353594
PMCPMC10290086
OpenAlexW4381734284

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.