Evidence map›Paper›PMID 37353491›Full record

ArticleNature communications2023

Intracellular pH dynamics regulates intestinal stem cell lineage specification.

Yi Liu, Efren Reyes, David Castillo-Azofeifa, Ophir D Klein, Todd Nystul, Diane L Barber

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Intracellular pH dynamics promotes zebrafish larval tail regeneration.bioRxiv : the preprint server for biology · 2026
    Article
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  8. Microorganisms · 2025
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yi LiuDepartment of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA, 94143, USA.ORCID 0000-0002-9529-208X
Efren Reyes *Program in Craniofacial Biology and Department of Orofacial Sciences, University of California San Francisco, San Francisco, CA, 94143, USA.
David Castillo-Azofeifa *Program in Craniofacial Biology and Department of Orofacial Sciences, University of California San Francisco, San Francisco, CA, 94143, USA.
Ophir D KleinProgram in Craniofacial Biology and Department of Orofacial Sciences, University of California San Francisco, San Francisco, CA, 94143, USA.ORCID 0000-0002-6254-7082
Todd NystulDepartments of Anatomy, University of California San Francisco, San Francisco, CA, 94143, USA. todd.nystul@ucsf.edu.ORCID 0000-0002-6250-2394
Diane L BarberDepartment of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA, 94143, USA. diane.barber@ucsf.edu.ORCID 0000-0001-7185-9435
University of California, San Francisco · US

Funding

Harnessing natural stem cell-based strategies for mammalian dental renewalR35DE026602 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KLEIN, OPHIR D · 2016 to 2023
$8.0M
Roles for Intracellular pH Dynamics in CancerR01CA197855 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DIANE L BARBER · 2016 to 2026
$4.2M
Wide-field super-resolution spinning disk confocal microscopeS10OD028611 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTMANN, TORSTEN · 2020 to 2020
$600k
Spinning disk confocal / FRAP microscope for quantitative live cell imagingS10RR026758 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTMANN, TORSTEN · 2010 to 2010
$500k
NCI NIH HHS R01 CA197855NCRR NIH HHS S10 RR026758NIDCR NIH HHS R35 DE026602NIH HHS S10 OD028611
6 · The paper itself

Abstract

Intracellular pH dynamics is increasingly recognized to regulate myriad cell behaviors. We report a finding that intracellular pH dynamics also regulates adult stem cell lineage specification. We identify an intracellular pH gradient in mouse small intestinal crypts, lowest in crypt stem cells and increasing along the crypt column. Disrupting this gradient by inhibiting H

Indexed as

IntestinesStem CellsAnimalsCell DifferentiationCell LineageHydrogen-Ion ConcentrationIntestinal MucosaMice

Identifiers

PMID37353491
PMCPMC10290085
OpenAlexW4381739237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.