Evidence map›Paper›PMID 37352230›Full record

ArticlePloS one2023

The structure of a Type III-A CRISPR-Cas effector complex reveals conserved and idiosyncratic contacts to target RNA and crRNA among Type III-A systems.

Mohammadreza Paraan, Mohamed Nasef, Lucy Chou-Zheng, Sarah A Khweis, Allyn J Schoeffler, Asma Hatoum-Aslan, Scott M Stagg, Jack A Dunkle

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Mohammadreza ParaanNational Center for In-situ Tomographic Ultramicroscopy, Simons Electron Microscopy Center, New York Structural Biology Center, New York, NY, United States of America.ORCID 0000-0002-8402-0134
Mohamed NasefDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, AL, United States of America.
Lucy Chou-ZhengDepartment of Microbiology, University of Illinois, Urbana-Champaign, IL, United States of America.
Sarah A KhweisDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, AL, United States of America.
Allyn J SchoefflerDepartment of Chemistry and Biochemistry, Loyola University New Orleans, New Orleans, LA, United States of America.
Asma Hatoum-AslanDepartment of Microbiology, University of Illinois, Urbana-Champaign, IL, United States of America.
Scott M StaggDepartment of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, United States of America.
Jack A DunkleDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, AL, United States of America.ORCID 0000-0001-6252-0587
University of Alabama · USUniversity of Illinois Urbana-Champaign · USFlorida State University · USLoyola University New Orleans · USNew York Structural Biology Center · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
The National Center for In-situ Tomographic Ultramicroscopy (NCITU) SupplementU24GM139171 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2020 to 2025
$8.7M
Determining the specificity and regulation of Type III CRISPR-Cas interferenceR35GM142966 · NIGMS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI DUNKLE, JACK ALBERT · 2021 to 2025
$1.8M
A Pixel Array Detector System for Small Angle X-ray ScatteringS10OD018483 · OD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CLASSEN, SCOTT · 2014 to 2014
$998k
NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R35 GM142966NIGMS NIH HHS U24 GM139171NIH HHS S10 OD018483
6 · The paper itself

Abstract

Type III CRISPR-Cas systems employ multiprotein effector complexes bound to small CRISPR RNAs (crRNAs) to detect foreign RNA transcripts and elicit a complex immune response that leads to the destruction of invading RNA and DNA. Type III systems are among the most widespread in nature, and emerging interest in harnessing these systems for biotechnology applications highlights the need for detailed structural analyses of representatives from diverse organisms. We performed cryo-EM reconstructions of the Type III-A Cas10-Csm effector complex from S. epidermidis bound to an intact, cognate target RNA and identified two oligomeric states, a 276 kDa complex and a 318 kDa complex. 3.1 Å density for the well-ordered 276 kDa complex allowed construction of atomic models for the Csm2, Csm3, Csm4 and Csm5 subunits within the complex along with the crRNA and target RNA. We also collected small-angle X-ray scattering data which was consistent with the 276 kDa Cas10-Csm architecture we identified. Detailed comparisons between the S. epidermidis Cas10-Csm structure and the well-resolved bacterial (S. thermophilus) and archaeal (T. onnurineus) Cas10-Csm structures reveal differences in how the complexes interact with target RNA and crRNA which are likely to have functional ramifications. These structural comparisons shed light on the unique features of Type III-A systems from diverse organisms and will assist in improving biotechnologies derived from Type III-A effector complexes.

Indexed as

CRISPR-Associated ProteinsRNA, Guide, CRISPR-Cas SystemsCRISPR-Cas SystemsMultiprotein ComplexesRNA, BacterialCRISPR-Associated ProteinsMultiprotein ComplexesRNA, BacterialRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID37352230
PMCPMC10289348
OpenAlexW4381839396

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.