Evidence map›Paper›PMID 37351707›Full record

ArticleMarine biotechnology (New York, N.Y.)2023

SNP Panel and Genomic Sex Identification in Atlantic Halibut (Hippoglossus hippoglossus).

Ellen M Weise, Mallory Van Wyngaarden, Cornelia Den Heyer, Joanna Mills Flemming, Tony Kess, Anthony L Einfeldt, Jonathan A D Fisher, Reina Ditta, Guillaume Pare, Daniel E Ruzzante

Abstract read
PubMed Publisher
In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Ellen M WeiseDepartment of Biology, Dalhousie University, 1355 Oxford St, B3H 4R2, Halifax, NS, Canada. emweise@dal.ca.ORCID http://orcid.org/0000-0002-4274-0192
Mallory Van WyngaardenDepartment of Biology, Dalhousie University, 1355 Oxford St, B3H 4R2, Halifax, NS, Canada.ORCID http://orcid.org/0000-0002-3789-2351
Cornelia Den HeyerBedford Institute of Oceanography, Fisheries and Oceans Canada, 1 Challenger Drive, B2Y 4A2, Dartmouth, NS, Canada.ORCID http://orcid.org/0000-0002-1933-5885
Joanna Mills FlemmingDepartment of Mathematics & Statistics, Dalhousie University, 6316 Coburg Rd, B3H 4R2, Halifax, NS, Canada.ORCID http://orcid.org/0000-0002-3517-3089
Tony KessBedford Institute of Oceanography, Fisheries and Oceans Canada, 1 Challenger Drive, B2Y 4A2, Dartmouth, NS, Canada.ORCID http://orcid.org/0000-0002-1079-3791
Anthony L EinfeldtDepartment of Biology, Dalhousie University, 1355 Oxford St, B3H 4R2, Halifax, NS, Canada.ORCID http://orcid.org/0000-0003-4588-3479
Jonathan A D FisherCentre for Fisheries Ecosystems Research, Fisheries and Marine Institute, Memorial University of Newfoundland, 155 Ridge Rd, A1C 5R3, St. John's, NL, Canada.ORCID http://orcid.org/0000-0002-9500-5300
Reina DittaPopulation Health Research Institute, 237 Barton Street, East Hamilton, ON, L8L 2X2, Canada.
Guillaume ParePopulation Health Research Institute, 237 Barton Street, East Hamilton, ON, L8L 2X2, Canada.ORCID http://orcid.org/0000-0002-6795-4760
Daniel E RuzzanteDepartment of Biology, Dalhousie University, 1355 Oxford St, B3H 4R2, Halifax, NS, Canada. daniel.ruzzante@dal.ca.ORCID http://orcid.org/0000-0002-8536-8335
Dalhousie University · CAFisheries and Oceans Canada · CAPopulation Health Research Institute · CAMemorial University of Newfoundland · CAParks Canada · CA

Funding

Fisheries and Oceans Canada MECTS-#4172345Natural Sciences and Engineering Research Council of Canada RGPIN-2019-04679Ocean Frontier Institute 102021-37
6 · The paper itself

Abstract

The ability to identify sex is necessary in population biology for a proper understanding of the dynamics of a population. In Atlantic halibut, phenotypic sex identification is not possible due to the lack of significant external morphological differences. We developed an Illumina SNP panel for Atlantic halibut with 4000 SNPs spread evenly throughout the genome with a minor allele frequency MAF ≥ 0.4, except for N = 249 SNPs located in a sex-determining region on chromosome 12, N = 176 of these SNPs were selected to genetically identify male and female individuals using a DAPC analysis. The genomic identification of sex allows for non-lethal sex determination and validation of sex identification in the field. The SNP panel is a new genomic resource for Atlantic halibut that will make it possible to generate the genotypic data for the large number of individuals needed to estimate population abundance using genomics and the Close Kin Mark Recapture (CKMR) approach, an emerging component of fisheries management and stock monitoring.

Indexed as

FlounderAnimalsFemaleGenomicsHumansMalePolymorphism, Single NucleotideSex Determination AnalysisAtlantic halibutSex identificationSNP

Identifiers

PMID37351707
OpenAlexW4381716452

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.