Evidence map›Paper›PMID 37351621›Full record

ArticleNucleic acids research2023

Enhanced mitochondrial G-quadruplex formation impedes replication fork progression leading to mtDNA loss in human cells.

Mara Doimo, Namrata Chaudhari, Sanna Abrahamsson, Valentin L'Hôte, Tran V H Nguyen, Andreas Berner, Mama Ndi, Alva Abrahamsson, Rabindra Nath Das, Koit Aasumets and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Light-Activated Molecules Targeting G-Quadruplex Nucleic Acids.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. G-quadruplex propensity inNAR genomics and bioinformatics · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Mara DoimoDepartment of Medical Biochemistry and Biophysics, Umeå University, 90187 Umeå, Sweden.ORCID 0000-0002-6771-5233
Namrata ChaudhariDepartment of Medical Biochemistry and Biophysics, Umeå University, 90187 Umeå, Sweden.
Sanna AbrahamssonBioinformatics and Data Centre, Sahlgrenska Academy, University of Gothenburg, 41390 Gothenburg, Sweden.
Valentin L'HôteDepartment of Medical Biochemistry and Biophysics, Umeå University, 90187 Umeå, Sweden.ORCID 0000-0001-5168-2943
Tran V H NguyenDepartment of Medical Biochemistry and Biophysics, Umeå University, 90187 Umeå, Sweden.
Andreas BernerDepartment of Medical Biochemistry and Biophysics, Umeå University, 90187 Umeå, Sweden.ORCID 0000-0001-7864-8403
Mama NdiDepartment of Medical Biochemistry and Biophysics, Umeå University, 90187 Umeå, Sweden.
Alva AbrahamssonDepartment of Chemistry, Umeå University, 90187 Umeå, Sweden.
Rabindra Nath DasDepartment of Chemistry, Umeå University, 90187 Umeå, Sweden.ORCID 0000-0001-6347-2169
Koit AasumetsDepartment of Environmental and Biological Sciences, University of Eastern Finland, FI-80101 Joensuu, Finland.
Steffi GoffartDepartment of Environmental and Biological Sciences, University of Eastern Finland, FI-80101 Joensuu, Finland.ORCID 0000-0001-8491-1458
Jaakko L O PohjoismäkiDepartment of Environmental and Biological Sciences, University of Eastern Finland, FI-80101 Joensuu, Finland.ORCID 0000-0002-1185-3610
Marcela Dávila LópezBioinformatics and Data Centre, Sahlgrenska Academy, University of Gothenburg, 41390 Gothenburg, Sweden.
Erik ChorellDepartment of Chemistry, Umeå University, 90187 Umeå, Sweden.ORCID 0000-0003-2523-1940
Sjoerd WanrooijDepartment of Medical Biochemistry and Biophysics, Umeå University, 90187 Umeå, Sweden.ORCID 0000-0001-6126-4382
Umeå University · SEUniversity of Eastern Finland · FIUniversity of Gothenburg · SEUniversity of Padua · IT

Funding

Marie Curie 751474
6 · The paper itself

Abstract

Mitochondrial DNA (mtDNA) replication stalling is considered an initial step in the formation of mtDNA deletions that associate with genetic inherited disorders and aging. However, the molecular details of how stalled replication forks lead to mtDNA deletions accumulation are still unclear. Mitochondrial DNA deletion breakpoints preferentially occur at sequence motifs predicted to form G-quadruplexes (G4s), four-stranded nucleic acid structures that can fold in guanine-rich regions. Whether mtDNA G4s form in vivo and their potential implication for mtDNA instability is still under debate. In here, we developed new tools to map G4s in the mtDNA of living cells. We engineered a G4-binding protein targeted to the mitochondrial matrix of a human cell line and established the mtG4-ChIP method, enabling the determination of mtDNA G4s under different cellular conditions. Our results are indicative of transient mtDNA G4 formation in human cells. We demonstrate that mtDNA-specific replication stalling increases formation of G4s, particularly in the major arc. Moreover, elevated levels of G4 block the progression of the mtDNA replication fork and cause mtDNA loss. We conclude that stalling of the mtDNA replisome enhances mtDNA G4 occurrence, and that G4s not resolved in a timely manner can have a negative impact on mtDNA integrity.

Indexed as

DNA, MitochondrialG-QuadruplexesDNA ReplicationHumansMitochondriaDNA, Mitochondrial

Identifiers

PMID37351621
PMCPMC10415151
OpenAlexW4381715834

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.