Evidence map›Paper›PMID 37349583›Full record

ArticleNature chemical biology2023

Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron.

Laura J Keller, Taylor H Nguyen, Lawrence J Liu, Brianna M Hurysz, Markus Lakemeyer, Matteo Guerra, Danielle J Gelsinger, Rachael Chanin, Nhi Ngo, Kenneth M Lum and 7 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
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  6. Review
  7. Article
  8. Review
  9. Identification of a secreted protease frombioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Moonlighting in the membrane.Nature chemical biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Laura J KellerDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-5611-2608
Taylor H NguyenDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1288-8882
Lawrence J LiuSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
Brianna M HuryszSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-9454-9234
Markus LakemeyerDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-6580-3275
Matteo GuerraDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Danielle J GelsingerSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
Rachael ChaninDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-4625-356X
Nhi NgoLundbeck La Jolla Research Center, Inc., San Diego, CA, USA.
Kenneth M LumLundbeck La Jolla Research Center, Inc., San Diego, CA, USA.
Franco FaucherDepartment of Chemistry, Stanford University, Stanford, CA, USA.
Phillip IpockDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0009-0000-7640-136X
Micah J NiphakisLundbeck La Jolla Research Center, Inc., San Diego, CA, USA.ORCID 0000-0001-9091-3679
Ami S BhattDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-8099-2975
Anthony J O'DonoghueSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
Kerwyn Casey HuangDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID 0000-0002-8043-8138
Matthew BogyoDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA. mbogyo@stanford.edu.ORCID 0000-0003-3753-4412
Stanford University · USUniversity of California San Diego · USLa Jolla Alcohol Research · USChan Zuckerberg Initiative (United States) · USFriedrich Schiller University Jena · DEStanford Medicine · US

Funding

GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
Antimicrobial Resistance and Horizontal Gene Transfer in the Human Gut Microbiome in Response to an AntibioticR01AI147023 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI RELMAN, DAVID A. · 2020 to 2024
$3.5M
Culture-free pathogen tracking in hospitalized patientsR01AI143757 · NIAID · STANFORD UNIVERSITY · PI BHATT, AMI SIDDHARTH · 2020 to 2023
$3.0M
Emerging novel mechanisms of antibiotic resistance in the prevalent foodborne pathogen, SalmonellaR01AI148623 · NIAID · STANFORD UNIVERSITY · PI BHATT, AMI SIDDHARTH · 2019 to 2023
$2.0M
Generation of highly selective activity based probes using chemically modified phageR01EB026285 · NIBIB · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2018 to 2021
$1.9M
Microbiome Driven Proteolysis as a Contributing Factor to Severity of Ulcerative Colitis Disease ActivityR01DK131005 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GONZALEZ, DAVID J · 2022 to 2024
$1.6M
Staphylococcus serine hydrolases as targets for therapeutic and imaging contrast agentsR01EB026332 · NIBIB · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2018 to 2021
$1.4M
COMPUTATIONAL METHODS FOR PROTEOMIC ANALYSISK22HG000044 · NHGRI · UNIVERSITY OF UTAH · PI GIDDINGS, MORGAN CORINNE · 2000 to 2005
$1.3M
Stanford Chem-H Chemistry/Biology Interface Predoctoral Training ProgramT32GM120007 · NIGMS · STANFORD UNIVERSITY · PI BERTOZZI, CAROLYN · 2016 to 2020
$1.2M
Molecular Pharmacology Training GrantT32GM113854 · NIGMS · STANFORD UNIVERSITY · PI MOCHLY-ROSEN, DARIA · 2015 to 2019
$1.1M
NHGRI NIH HHS K22 HG000044NIAID NIH HHS R01 AI143757NIAID NIH HHS R01 AI147023NIAID NIH HHS R01 AI148623NIBIB NIH HHS R01 EB026285NIBIB NIH HHS R01 EB026332NIDDK NIH HHS R01 DK131005NIGMS NIH HHS T32 GM007752NIGMS NIH HHS T32 GM113854NIGMS NIH HHS T32 GM120007
6 · The paper itself

Abstract

Serine hydrolases have important roles in signaling and human metabolism, yet little is known about their functions in gut commensal bacteria. Using bioinformatics and chemoproteomics, we identify serine hydrolases in the gut commensal Bacteroides thetaiotaomicron that are specific to the Bacteroidetes phylum. Two are predicted homologs of the human dipeptidyl peptidase 4 (hDPP4), a key enzyme that regulates insulin signaling. Our functional studies reveal that BT4193 is a true homolog of hDPP4 that can be inhibited by FDA-approved type 2 diabetes medications targeting hDPP4, while the other is a misannotated proline-specific triaminopeptidase. We demonstrate that BT4193 is important for envelope integrity and that loss of BT4193 reduces B. thetaiotaomicron fitness during in vitro growth within a diverse community. However, neither function is dependent on BT4193 proteolytic activity, suggesting a scaffolding or signaling function for this bacterial protease.

Indexed as

Bacteroides thetaiotaomicronDiabetes Mellitus, Type 2Dipeptidyl Peptidase 4HumansSerineDipeptidyl Peptidase 4Serine

Identifiers

PMID37349583
OpenAlexW4381612678

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.