Evidence map›Paper›PMID 37347003›Full record

ArticleJournal of biomedical optics2023

Stochastic three-dimensional numerical phantoms to enable computational studies in quantitative optoacoustic computed tomography of breast cancer.

Seonyeong Park, Umberto Villa, Fu Li, Refik Mert Cam, Alexander A Oraevsky, Mark A Anastasio

Open access · goldAbstract read
In one paragraph

Article in Journal of biomedical optics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Seonyeong ParkUniversity of Illinois Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.
Umberto VillaThe University of Texas at Austin, Oden Institute for Computational Engineering and Sciences, Austin, Texas, United States.ORCID 0000-0002-5142-2559
Fu LiUniversity of Illinois Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.
Refik Mert CamUniversity of Illinois Urbana-Champaign, Department of Electrical and Computer Engineering, Urbana, Illinois, United States.
Alexander A OraevskyTomoWave Laboratories, Houston, Texas, United States.ORCID 0000-0002-9212-6211
Mark A AnastasioUniversity of Illinois Urbana-Champaign, Department of Bioengineering, Urbana, Illinois, United States.ORCID 0000-0002-3192-4172
University of Illinois Urbana-Champaign · USThe University of Texas at Austin · USTomoWave Laboratories (United States) · US

Funding

The Center for Label-free Imagingand Multiscale Biophotonics (CLIMB)P41EB031772 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Stephen A Boppart · 2022 to 2026
$7.6M
A Computational Framework Enabling Virtual Imaging Trials of 3D Quantitative Optoacoustic Tomography Breast ImagingR01EB031585 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ANASTASIO, MARK A · 2022 to 2025
$2.3M
Advanced image reconstruction for accurate and high-resolution breast ultrasound tomographyR01EB028652 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ANASTASIO, MARK A, DURIC, NEBOJSA · 2019 to 2022
$2.2M
NIBIB NIH HHS P41 EB031772NIBIB NIH HHS R01 EB028652NIBIB NIH HHS R01 EB031585
6 · The paper itself

Abstract

Significance: When developing a new quantitative optoacoustic computed tomography (OAT) system for diagnostic imaging of breast cancer, objective assessments of various system designs through human trials are infeasible due to cost and ethical concerns. In prototype stages, however, different system designs can be cost-efficiently assessed via virtual imaging trials (VITs) employing ensembles of digital breast phantoms, i.e., numerical breast phantoms (NBPs), that convey clinically relevant variability in anatomy and optoacoustic tissue properties. Aim: The aim is to develop a framework for generating ensembles of realistic three-dimensional (3D) anatomical, functional, optical, and acoustic NBPs and numerical lesion phantoms (NLPs) for use in VITs of OAT applications in the diagnostic imaging of breast cancer. Approach: The generation of the anatomical NBPs was accomplished by extending existing NBPs developed by the U.S. Food and Drug Administration. As these were designed for use in mammography applications, substantial modifications were made to improve blood vasculature modeling for use in OAT. The NLPs were modeled to include viable tumor cells only or a combination of viable tumor cells, necrotic core, and peripheral angiogenesis region. Realistic optoacoustic tissue properties were stochastically assigned in the NBPs and NLPs. Results: To advance optoacoustic and optical imaging research, 84 datasets have been released; these consist of anatomical, functional, optical, and acoustic NBPs and the corresponding simulated multi-wavelength optical fluence, initial pressure, and OAT measurements. The generated NBPs were compared with clinical data with respect to the volume of breast blood vessels and spatially averaged effective optical attenuation. The usefulness of the proposed framework was demonstrated through a case study to investigate the impact of acoustic heterogeneity on OAT images of the breast. Conclusions: The proposed framework will enhance the authenticity of virtual OAT studies and can be widely employed for the investigation and development of advanced image reconstruction and machine learning-based methods, as well as the objective evaluation and optimization of the OAT system designs.

Indexed as

Breast NeoplasmsAlgorithmsBreastFemaleHumansPhantoms, ImagingTomographyTomography, X-Ray Computedacoustic breast phantomsNumerical breast phantomsoptical breast phantomsoptoacoustic computed tomographyphotoacoustic computed tomographyvirtual imaging trials

Identifiers

PMID37347003
PMCPMC10281048
OpenAlexW4381333095

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.