Evidence map›Paper›PMID 37346041›Full record

ArticleFrontiers in immunology2023

The development of endoplasmic reticulum-related gene signatures and the immune infiltration analysis of sepsis.

Yi Zhou, Yifang Chen, Jianbo Li, Zailin Fu, Qian Chen, Wei Zhang, Huan Luo, Minghua Xie

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yi ZhouDepartment of Pharmacy, First People's Hospital of Linping District, Hangzhou, Zhejiang, China.
Yifang ChenDepartment of Pharmacy, First People's Hospital of Linping District, Hangzhou, Zhejiang, China.
Jianbo LiDepartment of Pharmacy, First People's Hospital of Linping District, Hangzhou, Zhejiang, China.
Zailin FuDepartment of Pharmacy, First People's Hospital of Linping District, Hangzhou, Zhejiang, China.
Qian ChenDepartment of Pharmacy, First People's Hospital of Linping District, Hangzhou, Zhejiang, China.
Wei ZhangDepartment of Pharmacy, First People's Hospital of Linping District, Hangzhou, Zhejiang, China.
Huan LuoDepartment of Critical Care Medicine, Chongqing General Hospital, Chongqing, China.
Minghua XieDepartment of Pharmacy, First People's Hospital of Linping District, Hangzhou, Zhejiang, China.
Hangzhou First People's Hospital · CNFirst People's Hospital of Chongqing · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Sepsis is a complex condition involving multiorgan failure, resulting from the hosts' deleterious systemic immune response to infection. It is characterized by high mortality, with limited effective detection and treatment options. Dysregulated endoplasmic reticulum (ER) stress is directly involved in the pathophysiology of immune-mediated diseases. Methods: Clinical samples were obtained from Gene Expression Omnibus datasets (i.e., GSE65682, GSE54514, and GSE95233) to perform the differential analysis in this study. A weighted gene co-expression network analysis algorithm combining multiple machine learning algorithms was used to identify the diagnostic biomarkers for sepsis. Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment, and the single-sample gene set enrichment analysis algorithm were used to analyze immune infiltration characteristics in sepsis. PCR analysis and western blotting were used to demonstrate the potential role of Results: Four ERRGs, namely SET, LPIN1, TXN, and CD74, have been identified as characteristic diagnostic biomarkers for sepsis. Immune infiltration has been repeatedly proved to play a vital role both in sepsis and ER. Subsequently, the immune infiltration characteristics result indicated that the development of sepsis is mediated by immune-related function, as four diagnostic biomarkers were strongly associated with the immune infiltration landscape of sepsis. The biological experiments in vitro and vivo demonstrate TXN is emerging as crucial player in maintaining ER homeostasis in sepsis. Conclusion: Our research identified novel potential biomarkers for sepsis diagnosis, which point toward a potential strategy for the diagnosis and treatment of sepsis.

Indexed as

SepsisAlgorithmsBlotting, WesternEndoplasmic ReticulumEndoplasmic Reticulum StressHumansPhosphatidate PhosphataseLPIN1 protein, humanPhosphatidate Phosphatasediagnostic biomarkersendoplasmic reticulumimmune infiltrationmachine learningsepsis

Identifiers

PMID37346041
PMCPMC10280294
OpenAlexW4379538099

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.