Evidence map›Paper›PMID 37345986›Full record

ArticleCurrent protocols2023

Tissue-Specific RNA Localization in the Uterus During Implantation, Decidualization and Placentation: Technical Nuances of Various Labeling Approaches.

Amanda Dewar, Wenbo Deng, Xiaofei Sun, Sudhansu K Dey

Open access · greenAbstract read
In one paragraph

Article in Current protocols, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Amanda DewarDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Wenbo DengDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Xiaofei SunDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Sudhansu K DeyDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
University of Cincinnati Medical Center · USXiamen University · CN

Funding

Molecular signaling in uterine receptivity to implantationR01HD068524 · NICHD · CINCINNATI CHILDRENS HOSP MED CTR · PI Xiaofei Sun · 2011 to 2026
$5.3M
Endocannabinoid Signaling during Early PregnancyR01HD103475 · NICHD · CINCINNATI CHILDRENS HOSP MED CTR · PI DEY, SUDHANSU K · 2020 to 2024
$2.4M
NICHD NIH HHS R01 HD068524NICHD NIH HHS R01 HD103475
6 · The paper itself

Abstract

In situ hybridization (ISH) is a sensitive method used to localize a specific sequence of DNA or RNA in biological samples, including cells, tissue sections or whole organs. RNA ISH can be used to determine spatial gene expression using a single-stranded probe with a reverse-complementary sequence. Cell-specific gene expression has been studied using mRNA and protein levels. Signals produced by RNA probes are usually more specific than those produced by antibodies in immunostaining. Currently, ISH is the most widely used method to localize mRNA molecules. Traditionally, probes were labeled with radioactive isotopes, but the cumbersome procedures and potential health risk limit their acceptance. Recently, probes labeled with nonradioactive materials including digoxigenin, biotin and various fluorophores have been developed. The tyramide signal amplification system further enhances the sensitivity of detection. These methods have been applied in numerous studies in various tissues including reproductive organs. This article details three methods of RNA in situ hybridization: radioactive in situ hybridization, digoxigenin in situ hybridization, and digoxigenin-tyramide signal amplification fluorescein in situ hybridization. The pros and cons of each protocol are discussed. © 2023 Wiley Periodicals LLC. Basic Protocol 1: Radioactive in situ hybridization (radioactive-ISH) Basic Protocol 2: Digoxigenin in situ hybridization (DIG-ISH) Basic Protocol 3: Digoxigenin-tyramide signal amplification fluorescein in situ hybridization (DIG-TSA-FISH).

Indexed as

PlacentationRNADigoxigeninFemaleFluoresceinsHumansPregnancyRNA, MessengerUterusDigoxigeninFluoresceinsRNARNA, MessengerdigoxigeninFISHin situ hybridizationradioactiveRNA probetyramide signal amplification

Identifiers

PMID37345986
PMCPMC10299818
OpenAlexW4381597658

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.