Evidence map›Paper›PMID 37345480›Full record

ArticleBiology open2023

Effectors of anterior morphogenesis in C. elegans embryos.

Boopathi Balasubramaniam, Irini Topalidou, Melissa Kelley, Sarina M Meadows, Owen Funk, Michael Ailion, David S Fay

Open access · goldAbstract read
In one paragraph

Article in Biology open, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Pre-cuticle DPY-6 acts as a blueprint for aECM periodic organization inbioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Boopathi BalasubramaniamDepartment of Molecular Biology, College of Agriculture, Life Sciences and Natural Resources, University of Wyoming, Laramie 82071-3944, WY, USA.
Irini TopalidouDepartment of Biochemistry, University of Washington, Seattle 98195-7350, WA, USA.
Melissa KelleyDepartment of Molecular Biology, College of Agriculture, Life Sciences and Natural Resources, University of Wyoming, Laramie 82071-3944, WY, USA.
Sarina M MeadowsDepartment of Molecular Biology, College of Agriculture, Life Sciences and Natural Resources, University of Wyoming, Laramie 82071-3944, WY, USA.ORCID 0000-0002-7342-6120
Owen FunkDepartment of Molecular Biology, College of Agriculture, Life Sciences and Natural Resources, University of Wyoming, Laramie 82071-3944, WY, USA.
Michael AilionDepartment of Biochemistry, University of Washington, Seattle 98195-7350, WA, USA.ORCID 0000-0002-8070-1362
David S FayDepartment of Molecular Biology, College of Agriculture, Life Sciences and Natural Resources, University of Wyoming, Laramie 82071-3944, WY, USA.ORCID 0000-0002-7599-4017
University of Wyoming · USUniversity of Washington · US

Funding

Wyoming INBRE Phase 4- Equipment Supplement for x-ray diffractometer for Center for Advanced Scientific InstrumentationP20GM103432 · NIGMS · UNIVERSITY OF WYOMING · PI Nicolas A. Blouin · 2012 to 2026
$56.8M
In vivo regulation of the extracellular matrixR35GM136236 · NIGMS · UNIVERSITY OF WYOMING · PI David S Fay · 2020 to 2026
$3.8M
Proteins important for dense-core vesicle functionR01GM121481 · NIGMS · UNIVERSITY OF WASHINGTON · PI AILION, MICHAEL · 2018 to 2022
$1.8M
Mechanisms controlling tissue morphogenesis, architecture, and the response to mechanical forces in C. elegans.R01GM125091 · NIGMS · UNIVERSITY OF WYOMING · PI FAY, DAVID S · 2017 to 2019
$776k
NIGMS NIH HHSNIGMS NIH HHS P20 GM103432NIGMS NIH HHS R01 GM121481NIGMS NIH HHS R01 GM125091NIGMS NIH HHS R35 GM136236
6 · The paper itself

Abstract

During embryogenesis the nascent Caenorhabditis elegans epidermis secretes an apical extracellular matrix (aECM) that serves as an external stabilizer, preventing deformation of the epidermis by mechanical forces exerted during morphogenesis. At present, the factors that contribute to aECM function are mostly unknown, including the aECM components themselves, their posttranslational regulators, and the pathways required for their secretion. Here we showed that two proteins previously linked to aECM function, SYM-3/FAM102A and SYM-4/WDR44, colocalize to intracellular and membrane-associated puncta and likely function in a complex. Proteomics experiments also suggested potential roles for SYM-3/FAM102A and SYM-4/WDR44 family proteins in intracellular trafficking. Nonetheless, we found no evidence to support a critical function for SYM-3 or SYM-4 in the apical deposition of two aECM components, NOAH-1 and FBN-1. Moreover, loss of a key splicing regulator of fbn-1, MEC-8/RBPMS2, had surprisingly little effect on the abundance or deposition of FBN-1. Using a focused screening approach, we identified 32 additional proteins that likely contribute to the structure and function of the embryonic aECM. We also characterized morphogenesis defects in embryos lacking mir-51 microRNA family members, which display a similar phenotype to mec-8; sym double mutants. Collectively, these findings add to our knowledge of factors controlling embryonic morphogenesis.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsEmbryonic DevelopmentExtracellular MatrixMorphogenesisCaenorhabditis elegans ProteinsApical extracellular matrixCaenorhabditis elegansCell biologyDevelopmentMembrane traffickingMorphogenesis

Identifiers

PMID37345480
PMCPMC10339035
OpenAlexW4381598604

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.