Evidence map›Paper›PMID 37344884›Full record

ArticleGenome medicine2023

Whole genome sequencing across clinical trials identifies rare coding variants in GPR68 associated with chemotherapy-induced peripheral neuropathy.

Zia Khan, Min Jung, Megan Crow, Rajat Mohindra, Vidya Maiya, Joshua S Kaminker, David H Hackos, G Scott Chandler, Mark I McCarthy, Tushar Bhangale

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Pharmacogenomics of chemotherapy induced peripheral neuropathy using an electronic health record-derived definition: a genome-wide association study.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2025
    Article
  6. Review
  7. Article
  8. Recent advances in acid sensing by G protein coupled receptors.Pflugers Archiv : European journal of physiology · 2024
    Review
  9. Review
  10. Targeting sensory neuron GPCRs for peripheral neuropathic pain.Trends in pharmacological sciences · 2023
    Review
  11. Evolution of predictive risk factor analysis for chemotherapy-related toxicity.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Zia KhanGenentech, 1 DNA Way, South San Francisco, 94080, USA. khanz12@gene.com.ORCID 0000-0002-7859-3489
Min JungGenentech, 1 DNA Way, South San Francisco, 94080, USA.
Megan CrowGenentech, 1 DNA Way, South San Francisco, 94080, USA.
Rajat MohindraF. Hoffmann-La Roche, Grenzacherstrasse 124, 4070, Basel, Switzerland.
Vidya MaiyaGenentech, 1 DNA Way, South San Francisco, 94080, USA.
Joshua S KaminkerGenentech, 1 DNA Way, South San Francisco, 94080, USA.
David H HackosGenentech, 1 DNA Way, South San Francisco, 94080, USA.
G Scott ChandlerF. Hoffmann-La Roche, Grenzacherstrasse 124, 4070, Basel, Switzerland.
Mark I McCarthyGenentech, 1 DNA Way, South San Francisco, 94080, USA.
Tushar BhangaleGenentech, 1 DNA Way, South San Francisco, 94080, USA. tusharb@gene.com.
Gene Therapy Laboratory · FRRoche (Switzerland) · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDose-limiting toxicities significantly impact the benefit/risk profile of many drugs. Whole genome sequencing (WGS) in patients receiving drugs with dose-limiting toxicities can identify therapeutic hypotheses to prevent these toxicities. Chemotherapy-induced peripheral neuropathy (CIPN) is a common dose-limiting neurological toxicity of chemotherapies with no effective approach for prevention.

methodsWe conducted a genetic study of time-to-first peripheral neuropathy event using 30× germline WGS data from whole blood samples from 4900 European-ancestry cancer patients in 14 randomized controlled trials. A substantial number of patients in these trials received taxane and platinum-based chemotherapies as part of their treatment regimen, either standard of care or in combination with the PD-L1 inhibitor atezolizumab. The trials spanned several cancers including renal cell carcinoma, triple negative breast cancer, non-small cell lung cancer, small cell lung cancer, bladder cancer, ovarian cancer, and melanoma.

resultsWe identified a locus consisting of low-frequency variants in intron 13 of GRID2 associated with time-to-onset of first peripheral neuropathy (PN) indexed by rs17020773 (p = 2.03 × 10

conclusionsOur genetic study provides insight into the impact of low-frequency and rare coding genetic variation on PN risk and suggests that further study of GPR68 in sensory neurons may yield a therapeutic hypothesis for prevention of CIPN.

Indexed as

Antineoplastic AgentsCarcinoma, Non-Small-Cell LungLung NeoplasmsPeripheral Nervous System DiseasesBridged-Ring CompoundsFemaleHumansPaclitaxelRandomized Controlled Trials as TopicReceptors, G-Protein-CoupledTaxoidsAntineoplastic AgentsBridged-Ring CompoundsGPR68 protein, humanPaclitaxelReceptors, G-Protein-CoupledtaxaneTaxoidsCancerChemotherapy-induced peripheral neuropathyCIPNGPR68GRID2Neurological toxicityPaclitaxelPharmacogenomicsRare coding variantsTaxaneWhole genome sequencing

Identifiers

PMID37344884
PMCPMC10286344
OpenAlexW4381547275

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.