Evidence map›Paper›PMID 37343558›Full record

ArticleCurrent biology : CB2023

Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity.

Namrata Ahuja, Ernie Hwaun, Judit R Pungor, Ruhina Rafiq, Sal Nemes, Taylor Sakmar, Miranda A Vogt, Bret Grasse, Juan Diaz Quiroz, Tessa G Montague and 10 more

Open access · greenAbstract read
In one paragraph

Article in Current biology : CB, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A non-invasive method to genotype cephalopod sex by quantitative PCR.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Applied and environmental microbiology · 2025
    Article
  8. Review
  9. A perspective on neuroethology: what the past teaches us about the future of neuroethology.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2024
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 3 countries.

Namrata AhujaEugene Bell Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Ernie HwaunDepartment of Neurosurgery and Stanford Neurosciences Institute, Stanford University, Stanford, CA 94305, USA.
Judit R PungorInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA.
Ruhina RafiqEugene Bell Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Sal NemesEugene Bell Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Taylor SakmarMarine Resources Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Miranda A VogtMarine Resources Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Bret GrasseMarine Resources Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Juan Diaz QuirozEugene Bell Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Tessa G MontagueDepartment of Neuroscience, Columbia University, New York, NY 10027, USA.
Ryan W NullEugene Bell Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Danielle N DallisMarine Resources Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Daria GavriouchkinaMolecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0412, Japan.
Ferdinand MarletazCentre for Life's Origin & Evolution, Department of Ecology, Evolution & Environment, University College London, WC1E 6BT London, UK.
Lisa AbboMarine Resources Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Daniel S RokhsarMolecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0412, Japan; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Cristopher M NiellInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA.
Ivan SolteszDepartment of Neurosurgery and Stanford Neurosciences Institute, Stanford University, Stanford, CA 94305, USA.
Caroline B AlbertinEugene Bell Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA. Electronic address: calbertin@mbl.edu.
Joshua J C RosenthalEugene Bell Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA. Electronic address: jrosenthal@mbl.edu.
Marine Biological Laboratory · USNeurosciences Institute · USOkinawa Institute of Science and Technology Graduate University · JPUniversity of Oregon · USCentre for Life · GBColumbia University · US

Funding

A new animal model to elucidate mechanisms of gene regulation and embryonic patterningR35GM147273 · NIGMS · MARINE BIOLOGICAL LABORATORY · PI Caroline B Albertin · 2022 to 2026
$2.4M
Neural coding and functional organization of the octopus visual systemRF1NS118466 · NINDS · UNIVERSITY OF OREGON · PI NIELL, CRISTOPHER M · 2020 to 2021
$1.2M
Neural coding and functional organization of the octopus visual systemR01NS118466 · NINDS · UNIVERSITY OF OREGON · PI NIELL, CRISTOPHER M · 2023 to 2024
$695k
NIGMS NIH HHS R35 GM147273NINDS NIH HHS R01 NS118466NINDS NIH HHS RF1 NS118466
6 · The paper itself

Abstract

Cephalopods are remarkable among invertebrates for their cognitive abilities, adaptive camouflage, novel structures, and propensity for recoding proteins through RNA editing. Due to the lack of genetically tractable cephalopod models, however, the mechanisms underlying these innovations are poorly understood. Genome editing tools such as CRISPR-Cas9 allow targeted mutations in diverse species to better link genes and function. One emerging cephalopod model, Euprymna berryi, produces large numbers of embryos that can be easily cultured throughout their life cycle and has a sequenced genome. As proof of principle, we used CRISPR-Cas9 in E. berryi to target the gene for tryptophan 2,3 dioxygenase (TDO), an enzyme required for the formation of ommochromes, the pigments present in the eyes and chromatophores of cephalopods. CRISPR-Cas9 ribonucleoproteins targeting tdo were injected into early embryos and then cultured to adulthood. Unexpectedly, the injected specimens were pigmented, despite verification of indels at the targeted sites by sequencing in injected animals (G0s). A homozygote knockout line for TDO, bred through multiple generations, was also pigmented. Surprisingly, a gene encoding indoleamine 2,3, dioxygenase (IDO), an enzyme that catalyzes the same reaction as TDO in vertebrates, was also present in E. berryi. Double knockouts of both tdo and ido with CRISPR-Cas9 produced an albino phenotype. We demonstrate the utility of these albinos for in vivo imaging of Ca

Indexed as

CRISPR-Cas SystemsDecapodiformesAnimalsGene EditingGene Knockout TechniquesGenomealbinocalcium imagingcephalopodCRISPR-Cas9Euprymna berryigene editingsquid

Identifiers

PMID37343558
PMCPMC12628842
OpenAlexW4381384378

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.