Evidence map›Paper›PMID 37343102›Full record

ArticleScience advances2023

Disruption of proteome by an oncogenic fusion kinase alters metabolism in fibrolamellar hepatocellular carcinoma.

Solomon N Levin, Michael D Tomasini, James Knox, Mahsa Shirani, Bassem Shebl, David Requena, Jackson Clark, Søren Heissel, Hanan Alwaseem, Rodrigo Surjan and 7 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Solomon N LevinLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0000-0003-1548-8881
Michael D TomasiniLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0000-0002-9634-2560
James KnoxLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0009-0006-9451-8725
Mahsa ShiraniLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0009-0008-5171-3808
Bassem SheblLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.
David RequenaLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0000-0002-5968-1133
Jackson ClarkLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.
Søren HeisselProteomics Resource Center, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.
Hanan AlwaseemProteomics Resource Center, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0000-0002-4946-1436
Rodrigo SurjanGeneral Surgery Division, Surgery Department, Hospital Nove de Julho, São Paulo, Brazil.ORCID 0000-0003-3918-8920
Ron LahaskyLahasky Medical Clinic, Abbeville, LA 70510, USA.
Henrik MolinaProteomics Resource Center, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0000-0001-8950-4990
Michael S TorbensonDivision of Anatomic Pathology, Mayo Clinic, Rochester, MN 55904, USA.ORCID 0000-0002-8334-7725
Barbara LyonsThe Fibrolamellar Registry, New York, NY 10028, USA.ORCID 0000-0003-3242-2104
Rachael D MiglerThe Fibrolamellar Registry, New York, NY 10028, USA.ORCID 0009-0007-9808-1820
Philip CoffinoLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0000-0003-0344-5083
Sanford M SimonLaboratory of Cellular Biophysics, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.ORCID 0000-0002-8615-4224
Rockefeller University · USFibrolamellar Cancer Foundation · USLahey Hospital and Medical Center · USMayo Clinic · USNew Mexico State University · USUniversidade Nove de Julho · BR

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Developing, Demonstrating, and Disseminating Innovative Programs to Achieve Translational SuccessUL1TR001866 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY, KRUEGER, JAMES G · 2016 to 2025
$40.6M
Project 4: ImmunovirotherapyP50CA210964 · NCI · MAYO CLINIC ROCHESTER · PI Zongming Eric Chen · 2018 to 2026
$20.5M
What differences between the chimeric fusion oncoprotein DNAJB1-PRKACA and native kinase PRKACA lead to transformation in the childhood cancer, fibrolamellar hepatocellular carcinoma?U54CA243126 · NCI · ROCKEFELLER UNIVERSITY · PI SIMON, SANFORD M · 2019 to 2023
$5.4M
NCATS NIH HHS UL1 TR001866NCI NIH HHS P50 CA210964NCI NIH HHS U54 CA243126NIGMS NIH HHS T32 GM007739
6 · The paper itself

Abstract

Fibrolamellar hepatocellular carcinoma (FLC) is a usually lethal primary liver cancer driven by a somatic dysregulation of protein kinase A. We show that the proteome of FLC tumors is distinct from that of adjacent nontransformed tissue. These changes can account for some of the cell biological and pathological alterations in FLC cells, including their drug sensitivity and glycolysis. Hyperammonemic encephalopathy is a recurrent problem in these patients, and established treatments based on the assumption of liver failure are unsuccessful. We show that many of the enzymes that produce ammonia are increased and those that consume ammonia are decreased. We also demonstrate that the metabolites of these enzymes change as expected. Thus, hyperammonemic encephalopathy in FLC may require alternative therapeutics.

Indexed as

Brain DiseasesCarcinoma, HepatocellularLiver NeoplasmsNeurotoxicity SyndromesAmmoniaHumansProteomeAmmoniaProteome

Identifiers

PMID37343102
PMCPMC10284549
OpenAlexW4381547163

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.