Evidence map›Paper›PMID 37342995›Full record

ArticlePloS one2023

Characterization of cerebrospinal fluid (CSF) microbiota at the time of initial surgical intervention for children with hydrocephalus.

Shailly Pandey, Kathryn B Whitlock, Matthew R Test, Paul Hodor, Christopher E Pope, David D Limbrick, Patrick J McDonald, Jason S Hauptman, Lucas R Hoffman, Tamara D Simon and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Shailly PandeyUniversity of Washington School of Medicine, Seattle, Washington, United States of America.
Kathryn B WhitlockNew Harmony Statistical Consulting, Clinton, Washington, United States of America.
Matthew R TestDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.
Paul HodorSeattle Children's Research Institute, Seattle, Washington, United States of America.ORCID 0000-0001-7770-8347
Christopher E PopeDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.
David D LimbrickDepartment of Neurosurgery, Washington University in St. Louis, St. Louis, Missouri, United States of America.
Patrick J McDonaldSection of Neurosurgery, University of Manitoba, Winnipeg, Manitoba, Canada.
Jason S HauptmanSeattle Children's Research Institute, Seattle, Washington, United States of America.
Lucas R HoffmanDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.
Tamara D SimonDepartment of Pediatrics, University of Southern California, Los Angeles, California, United States of America.ORCID 0000-0003-4734-7020
Cerebrospinal FLuId MicroBiota in Shunts (CLIMB) Study Group
University of Washington · USSeattle Children's Hospital · USChildren's Hospital of Winnipeg · CASt. Louis Children's Hospital · USUniversity of Southern California · US

Funding

Southern California Clinical and Translational Science InstituteUL1TR001855 · NCATS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Thomas A Buchanan, Michele D. Kipke · 2016 to 2026
$81.3M
Translational Research Center to Expedite Novel Therapies in Cystic FibrosisP30DK089507 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI PRADEEP k SINGH · 2010 to 2026
$21.4M
Targeting the CSF microbiota to optimize CSF shunt infection treatmentR01NS095979 · NINDS · SEATTLE CHILDREN'S HOSPITAL · PI SIMON, TAMARA DANIELLE · 2016 to 2020
$2.0M
Patient-oriented microbiome and advanced culture approaches to identifying the microbial determinants of chronic pediatric diseaseK24HL141669 · NHLBI · UNIVERSITY OF WASHINGTON · PI Lucas R Hoffman · 2018 to 2026
$929k
NCATS NIH HHS UL1 TR001855NHLBI NIH HHS K24 HL141669NIDDK NIH HHS P30 DK089507NINDS NIH HHS R01 NS095979
6 · The paper itself

Abstract

objectiveTo characterize the microbiota of the cerebrospinal fluid (CSF) from children with hydrocephalus at the time of initial surgical intervention. STUDY

designCSF was obtained at initial surgical intervention. One aliquot was stored in skim milk-tryptone-glucose-glycerol (STGG) medium and the second was unprocessed; both were then stored at -70°C. Bacterial growth for CSF samples stored in STGG were subsequently characterized using aerobic and anaerobic culture on blood agar and MALDI-TOF sequencing. All unprocessed CSF samples underwent 16S quantitative polymerase chain reaction (qPCR) sequencing, and a subset underwent standard clinical microbiological culture. CSF with culture growth (either after storage in STGG or standard clinical) were further analyzed using whole-genome amplification sequencing (WGAS).

results11/66 (17%) samples stored in STGG and 1/36 (3%) that underwent standard clinical microbiological culture demonstrated bacterial growth. Of the organisms present, 8 were common skin flora and 4 were potential pathogens; only 1 was also qPCR positive. WGAS findings and STGG culture findings were concordant for only 1 sample, identifying Staphylococcus epidermidis. No significant difference in time to second surgical intervention was observed between the STGG culture-positive and negative groups. CONCLUSION(S): Using high sensitivity methods, we detected the presence of bacteria in a subset of CSF samples at the time of first surgery. Therefore, the true presence of bacteria in CSF of children with hydrocephalus cannot be ruled out, though our findings may suggest these bacteria are contaminants or false positives of the detection methods. Regardless of origin, the detection of microbiota in the CSF of these children may not have any clinical significance.

Indexed as

BacteriaHydrocephalusCerebrospinal FluidChildCulture MediaHumansWhole Genome SequencingCulture Media

Identifiers

PMID37342995
PMCPMC10284395
OpenAlexW4381547425

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.