Evidence map›Paper›PMID 37340302›Full record

ArticleLipids in health and disease2023

In vitro assessment of the pathogenicity of the LDLR c.2160delC variant in familial hypercholesterolemia.

Shaoyi Lin, Tingting Hu, Kaihan Wang, Jiaqi Wang, Yunyun Zhu, Xiaomin Chen

Open access · goldAbstract read
In one paragraph

Article in Lipids in health and disease, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Shaoyi Lin *Department of Cardiology, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China.
Tingting Hu *Department of Cardiology, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China.
Kaihan Wang *Department of Cardiology, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China.
Jiaqi WangDepartment of Cardiology, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China.
Yunyun ZhuDepartment of Geriatrics, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China.
Xiaomin ChenDepartment of Cardiology, The First Affiliated Hospital of Ningbo University, Ningbo, Zhejiang, China. chxmin@hotmail.com.
Ningbo University · CNNingbo First Hospital · CNZhejiang University · CN

Funding

the Key Laboratory of Precision Medicine for Atherosclerotic Disease of Zhejiang Province 2022E10026the Key Technology R&D Program of Ningbo 2022Z149the Medical Health Science and Technology Project of Zhejiang Provincial Health Commission 2020KY822
6 · The paper itself

Abstract

backgroundFamilial hypercholesterolemia (FH) is an inherited disorder with markedly elevated low-density lipoprotein cholesterol (LDL-C) and premature atherosclerotic cardiovascular disease. Although many mutations have been reported in FH, only a few have been identified as pathogenic mutations. This study aimed to confirm the pathogenicity of the LDL receptor (LDLR) c.2160delC variant in FH.

methodsIn this study, the proband and her family members were systematically investigated, and a pedigree map was drawn. High-throughput whole-exome sequencing was used to explore the variants in this family. Next, quantitative polymerase chain reaction (qPCR), western blot (WB) assays, and flow cytometry were conducted to detect the effect of the LDLR c.2160delC variant on its expression. The LDL uptake capacity and cell localization of LDLR variants were analyzed by confocal microscopy.

resultsAccording to Dutch Lipid Clinic Network (DLCN) diagnostic criteria, three FH patients were identified with the LDLR c.2160delC variant in this family. An in-silico analysis suggested that the deletion mutation at the 2160 site of LDLR causes a termination mutation. The results of qPCR and WB verified that the LDLR c.2160delC variant led to early termination of LDLR gene transcription. Furthermore, the LDLR c.2160delC variant caused LDLR to accumulate in the endoplasmic reticulum, preventing it from reaching the cell surface and internalizing LDL.

conclusionsThe LDLR c.2160delC variant is a terminating mutation that plays a pathogenic role in FH.

Indexed as

Genetic VariationHyperlipoproteinemia Type IIFemaleHumansMutationPhenotypeReceptors, LDLVirulenceLDLR protein, humanReceptors, LDLEndoplasmic reticulumFamilial hypercholesterolemiaLow-density lipoprotein cholesterolLow-density lipoprotein receptorWhole-exome sequencing

Identifiers

PMID37340302
PMCPMC10280840
OpenAlexW4381435634

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.