ArticleNature communications2023
Diploid and tetraploid genomes of Acorus and the evolution of monocots.
Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed.
- PlantRG: A Comprehensive and User-Friendly Database for Plant Resistance Gene Analogs (RGAs).Plant biotechnology journal · 2026Article
- Genome-Wide Characterization and Salt-Responsive Expression Divergence of Chromosome Group 2 and Group 6Plants (Basel, Switzerland) · 2026Article
- Chromosome-Scale Genome Assemblies of Duckweeds Provide Insights Into Genomic Plasticity, Aquatic Adaptation, and Morphological Reduction.Genome biology and evolution · 2026Article
- Hybridization footprint and the mechanism of leaf color differences inHorticulture research · 2026Article
- Comprehensive analysis of the GeBP gene family in cucumber highlights functional divergence in fruit development and stress tolerance.BMC plant biology · 2026Article
- Genome stabilization in the neotetraploid wasabi (Eutrema japonicum): subgenome dominance and extensive chromosomal rearrangements.BMC plant biology · 2026Article
- Genome-wide identification of tomato B-RRs gene family and expression analysis in response to ABA and drought.PloS one · 2026Article
- Telomere-to-telomere gapless genome assembly of Acorus tatarinowii.Scientific data · 2025Article
- Genomic Patterns of Loss of Distyly and Polyploidization in Primroses.Molecular biology and evolution · 2025Article
- Chromosome fusions shaped karyotype evolution and evolutionary relationships in the model family Brassicaceae.Nature communications · 2025Article
- Chromosome-level genome assembly of Pontederia cordata L. provides insights into its rapid adaptation and variation of flower colours.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025Article
- Genome sequencing of three Polyscias species reveals common features in terpene synthase gene family evolution in these species.The plant genome · 2025Article
- Dosage sensitivity shapes balanced expression and gene longevity of homoeologs after whole-genome duplications in angiosperms.The Plant cell · 2024Article
- Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis.Communications biology · 2024Article
- Kazakhstan Has an Unexpected Diversity of Medicinal Plants of the GenusPlants (Basel, Switzerland) · 2024Article
- Chromosome-level genome assembly of the threatened resource plant Cinnamomum chago.Scientific data · 2024Article
- Genome-wide identification and expression analysis of phytochrome gene family in Aikang58 wheat (Frontiers in plant science · 2024Article
- Genome-wide characterization and expression profiling of the HD-ZIP gene family in Acoraceae under salinity and cold stress.Frontiers in plant science · 2024Article
- Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2023Article
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37 authors.
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Abstract
Monocots are a major taxon within flowering plants, have unique morphological traits, and show an extraordinary diversity in lifestyle. To improve our understanding of monocot origin and evolution, we generate chromosome-level reference genomes of the diploid Acorus gramineus and the tetraploid Ac. calamus, the only two accepted species from the family Acoraceae, which form a sister lineage to all other monocots. Comparing the genomes of Ac. gramineus and Ac. calamus, we suggest that Ac. gramineus is not a potential diploid progenitor of Ac. calamus, and Ac. calamus is an allotetraploid with two subgenomes A, and B, presenting asymmetric evolution and B subgenome dominance. Both the diploid genome of Ac. gramineus and the subgenomes A and B of Ac. calamus show clear evidence of whole-genome duplication (WGD), but Acoraceae does not seem to share an older WGD that is shared by most other monocots. We reconstruct an ancestral monocot karyotype and gene toolkit, and discuss scenarios that explain the complex history of the Acorus genome. Our analyses show that the ancestors of monocots exhibit mosaic genomic features, likely important for that appeared in early monocot evolution, providing fundamental insights into the origin, evolution, and diversification of monocots.
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