Evidence map›Paper›PMID 37339282›Full record

ArticleMicrobial genomics2023

Enteric fever cluster identification in South Africa using genomic surveillance of

Anthony Marius Smith, Linda Kathleen Erasmus, Nomsa Pauline Tau, Shannon Lucrecia Smouse, Hlengiwe Mimmy Ngomane, Bolele Disenyeng, Andrew Whitelaw, Charlene Ann Lawrence, Phuti Sekwadi, Juno Thomas

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Whole-genome sequencing for surveillance ofAfrican journal of laboratory medicine · 2025
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anthony Marius SmithCentre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa.
Linda Kathleen ErasmusCentre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa.
Nomsa Pauline TauCentre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa.
Shannon Lucrecia SmouseCentre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa.
Hlengiwe Mimmy NgomaneCentre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa.
Bolele DisenyengCentre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa.
Andrew WhitelawDepartment of Pathology, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Charlene Ann LawrenceCommunicable Disease Control, Service Priorities Coordination, Department of Health, Cape Town, South Africa.
Phuti SekwadiCentre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa.
Juno ThomasCentre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, Johannesburg, South Africa.

Funding

Department of Health
6 · The paper itself

Abstract

The National Institute for Communicable Diseases in South Africa participates in national laboratory-based surveillance for human isolates of

Indexed as

Salmonella typhiTyphoid FeverGenome, BacterialGenomicsHumansSouth AfricaAfricaclusterenteric fevergenomicoutbreakSalmonella TyphiSouth AfricasurveillanceWGSwhole-genome sequencing

Identifiers

PMID37339282
PMCPMC10327498

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.