Evidence map›Paper›PMID 37337966›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2023

Phenotypic presentation of Mendelian disease across the diagnostic trajectory in electronic health records.

Rory J Tinker, Josh Peterson, Lisa Bastarache

Open access · hybridAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Decoding Genetic Disease Through the Skin: Lessons From the UDN.International journal of dermatology · 2026
    Article
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  3. Article
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  5. Article
  6. Diagnostic delay in monogenic disease: A scoping review.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Rory J TinkerDivision of Medical Genetics and Genomic Medicine, Vanderbilt University Medical Center, Nashville, TN.
Josh PetersonVanderbilt University Medical Center, Department of Medicine, Nashville, TN; Vanderbilt University Medical Center, Department of Biomedical Informatics, Nashville, TN.
Lisa BastaracheVanderbilt University Medical Center, Department of Biomedical Informatics, Nashville, TN. Electronic address: Lisa.bastarache@vumc.org.
Vanderbilt University Medical Center · US

Funding

Overall: Eunice Kennedy Shriver Intellectual and Developmental Disabilities Research Center at VanderbiltP50HD103537 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jeffrey L Neul · 2020 to 2026
$10.3M
From GWAS to PheWAS: Scanning the EMR Phenome for Gene-disease AssociationsR01LM010685 · NLM · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BASTARACHE, LISA · 2011 to 2022
$6.3M
Translating the Clinical Knowledge of Mendelian Diseases to Real-world EHR Data to Improve Identification of Undiagnosed PatientsR01HG012657 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Lisa Bastarache, Douglas Ruderfer · 2022 to 2026
$4.3M
NHGRI NIH HHS R01 HG012657NICHD NIH HHS P50 HD103537NLM NIH HHS R01 LM010685
6 · The paper itself

Abstract

purposeTo investigate the phenotypic presentation of Mendelian disease across the diagnostic trajectory in the electronic health record (EHR).

methodsWe applied a conceptual model to delineate the diagnostic trajectory of Mendelian disease to the EHRs of patients affected by 1 of 9 Mendelian diseases. We assessed data availability and phenotype ascertainment across the diagnostic trajectory using phenotype risk scores and validated our findings via chart review of patients with hereditary connective tissue disorders.

resultsWe identified 896 individuals with genetically confirmed diagnoses, 216 (24%) of whom had fully ascertained diagnostic trajectories. Phenotype risk scores increased following clinical suspicion and diagnosis (P < 1 × 10

conclusionUsing a novel conceptual model to study the diagnostic trajectory of genetic disease in the EHR, we demonstrated that phenotype ascertainment is, in large part, driven by the clinical examinations and studies prompted by clinical suspicion of a genetic disease, a process we term diagnostic convergence. Algorithms designed to detect undiagnosed genetic disease should consider censoring EHR data at the first date of clinical suspicion to avoid data leakage.

Indexed as

AlgorithmsElectronic Health RecordsHumansPhenotypeDiagnostic ConvergenceDiagnostic delayEHRMendelian genetic disordersRare disease

Identifiers

PMID37337966
PMCPMC11092403
OpenAlexW4381053231

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.